View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_101 (Length: 299)

Name: NF8180A_low_101
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_101
NF8180A_low_101
[»] chr4 (1 HSPs)
chr4 (6-279)||(31821520-31821793)
[»] chr5 (2 HSPs)
chr5 (157-208)||(31600459-31600510)
chr5 (147-208)||(129361-129422)
[»] chr6 (1 HSPs)
chr6 (155-208)||(3295803-3295856)
[»] chr3 (6 HSPs)
chr3 (147-208)||(52103609-52103670)
chr3 (147-208)||(8923633-8923694)
chr3 (162-208)||(8922900-8922946)
chr3 (162-208)||(41325838-41325884)
chr3 (162-208)||(50107584-50107630)
chr3 (147-208)||(41326546-41326607)
[»] chr8 (1 HSPs)
chr8 (147-208)||(38443035-38443096)
[»] chr1 (1 HSPs)
chr1 (147-208)||(49385789-49385850)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 279
Target Start/End: Complemental strand, 31821793 - 31821520
Alignment:
Q  6 aaatttgaacccacgtccaacggtatttaaggcctattcaataactgaaataaatttttagagattggagataagttactttgtctttgcattatatgtt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31821793 aaatttgaacccacgtccaacggtatttaaggcctattcaataactgaaataaatttttagagattggagataagttactttgtctttgcattatatgtt 31821694  T
Q  106 atgtttgaacattatgttgttgctgaaagtagcttttccttagtccatatttgcttcatttagagttgctccatttaccccatttatcatcatggatttg 205  Q
    |||||||||||||||||||||||| ||||||||||||| ||||| |||||| ||||||||||| |||||| |||||| || ||||| |||||||||||||    
T  31821693 atgtttgaacattatgttgttgctcaaagtagcttttctttagttcatattcgcttcatttagggttgcttcatttatcctatttaccatcatggatttg 31821594  T
Q  206 tgaggatgtaagaaccgaaccagtgatccgacgagtatcaagatttaaaccaattaaatttaatcattataaaa 279  Q
    |||||||||||||| ||||||| |||||||| |||||| ||||| |||||||||||||||||||||||||||||    
T  31821593 tgaggatgtaagaatcgaaccaatgatccgatgagtatgaagatataaaccaattaaatttaatcattataaaa 31821520  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 31600459 - 31600510
Alignment:
Q  157 tgcttcatttagagttgctccatttaccccatttatcatcatggatttgtga 208  Q
    |||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  31600459 tgctccatttagacttgctccatttaccccatttatcatcatggatgtgtga 31600510  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 129422 - 129361
Alignment:
Q  147 agtccatatttgcttcatttagagttgctccatttaccccatttatcatcatggatttgtga 208  Q
    |||||||||||||| |||||    |||| ||||||||| ||||||||||||||||| |||||    
T  129422 agtccatatttgctccatttgtctttgcaccatttacctcatttatcatcatggatgtgtga 129361  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 3295856 - 3295803
Alignment:
Q  155 tttgcttcatttagagttgctccatttaccccatttatcatcatggatttgtga 208  Q
    ||||||||||||||  ||||||||||||||||||||| |||||||||| |||||    
T  3295856 tttgcttcatttaggtttgctccatttaccccatttaccatcatggatatgtga 3295803  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 52103609 - 52103670
Alignment:
Q  147 agtccatatttgcttcatttagagttgctccatttaccccatttatcatcatggatttgtga 208  Q
    ||||||| ||||||||||||||  |||||||||||||||||||||  ||||||||| |||||    
T  52103609 agtccatctttgcttcatttaggtttgctccatttaccccatttactatcatggatgtgtga 52103670  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 8923694 - 8923633
Alignment:
Q  147 agtccatatttgcttcatttagagttgctccatttaccccatttatcatcatggatttgtga 208  Q
    ||||||| |||||| ||||| |  ||||||||||||||||||||| |||||||||| |||||    
T  8923694 agtccatctttgctccatttgggtttgctccatttaccccatttaccatcatggatgtgtga 8923633  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 8922900 - 8922946
Alignment:
Q  162 catttagagttgctccatttaccccatttatcatcatggatttgtga 208  Q
    |||||||  |||||| ||||||||||||||||||||||||| |||||    
T  8922900 catttaggtttgctcaatttaccccatttatcatcatggatgtgtga 8922946  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 41325838 - 41325884
Alignment:
Q  162 catttagagttgctccatttaccccatttatcatcatggatttgtga 208  Q
    |||||||  |||||| ||||||||||||||||||||||||| |||||    
T  41325838 catttaggtttgctcaatttaccccatttatcatcatggatgtgtga 41325884  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 50107584 - 50107630
Alignment:
Q  162 catttagagttgctccatttaccccatttatcatcatggatttgtga 208  Q
    |||||||  |||||| ||||||||||||||||||||||||| |||||    
T  50107584 catttaggtttgctcaatttaccccatttatcatcatggatgtgtga 50107630  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 41326607 - 41326546
Alignment:
Q  147 agtccatatttgcttcatttagagttgctccatttaccccatttatcatcatggatttgtga 208  Q
    ||||||| |||||| ||||| |  ||||||||||||||| ||||| |||||||||| |||||    
T  41326607 agtccatctttgctccatttgggtttgctccatttacccaatttaccatcatggatgtgtga 41326546  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 38443035 - 38443096
Alignment:
Q  147 agtccatatttgcttcatttagagt-tgctccatttaccccatttatcatcatggatttgtga 208  Q
    ||||||| |||||| |||||| ||| |||||||||||||||||||| |||||||||| |||||    
T  38443035 agtccatctttgctccattta-agtctgctccatttaccccatttaccatcatggatgtgtga 38443096  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 49385850 - 49385789
Alignment:
Q  147 agtccatatttgcttcatttagagttgctccatttaccccatttatcatcatggatttgtga 208  Q
    ||||||| ||||||  ||||||  |||| |||||||||||||||| |||||||||| |||||    
T  49385850 agtccatctttgctcaatttaggattgcaccatttaccccatttaccatcatggatatgtga 49385789  T

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