View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8180A_low_102 (Length: 297)
Name: NF8180A_low_102
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_102 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 32073957 - 32073684
Alignment:
| Q |
17 |
taccatattatttactgtcggtgagtcaatagtgacacacaaagtgatctctccttccaaccaaattttaataatcatgcacgagtgtaaggaatcaaac |
116 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32073957 |
taccatattatttagtgtcggtgagtcaatagtgacacacaaagtgatctctccttccaaccaaattttaataatcatgcacgagtgtaaggaatcaaac |
32073858 |
T |
|
| Q |
117 |
atatgtccactttcatagggagttagtcaaaatgtatttgatctaagttcaaacaacatacattttacttaagtgttactcagatgacgtttgaccttta |
216 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
32073857 |
atatgtccactttcataaggagttagtcaaaatgtatttgatctaagttcaaacaacatacattttacataagtgttactcatatgacgtttgaccttta |
32073758 |
T |
|
| Q |
217 |
cgccgtattaaataatgagagataagtatttcatttgtctgtattttttattgactggattaccatattcttcg |
290 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||| |||| |
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|
| T |
32073757 |
cgccgtattaaataatgagagataagtacttcatttgtctgtattttttattgaatggattaccagattattcg |
32073684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 32074216 - 32073949
Alignment:
| Q |
16 |
ttaccatattatttactgtcggtgagtcaatagtgacacacaaagtgatctctccttccaaccaaattttaataatcatgcacgagtgtaaggaatcaaa |
115 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| ||||| |
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| T |
32074216 |
ttaccatattattcagtgtcggtgagtcaatagtgacacacaaagtgatctctccttccaaccaaattttatt---catgcacgaatgtaaggagtcaaa |
32074120 |
T |
|
| Q |
116 |
catatgtccactttcatagggagttagtcaaaatgtatttgatctaagttcaaacaacatacattttacttaagtgttactcagatgacgtttgaccttt |
215 |
Q |
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|
||||||| |||||||| | |||||||||||| ||||||||||||| | ||| || ||||||||||||||| ||||||||||| ||||||||||||| || |
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|
| T |
32074119 |
catatgttcactttcacaaggagttagtcaatatgtatttgatctgaattcggaccacatacattttactttagtgttactcatatgacgtttgaccatt |
32074020 |
T |
|
| Q |
216 |
acgccgtattaaataatgagagataagtatttcatttgtctgtatt-ttttattgactggattaccatatt |
285 |
Q |
| |
|
| ||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||| ||||||||| |
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| T |
32074019 |
atgccgtattaaataatgagagataagtactccatttgtctgtatttttttattgactggaataccatatt |
32073949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 32 - 291
Target Start/End: Complemental strand, 32065937 - 32065679
Alignment:
| Q |
32 |
tgtcggtgagtcaatagtgacacacaaagtga--tctctccttccaaccaaattttaataatcatgcacgagtgtaaggaatcaaacatatgtccacttt |
129 |
Q |
| |
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||||||||||| ||| |||||||||||||||| ||| || |||||||||||||||| | ||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
32065937 |
tgtcggtgagtaaatggtgacacacaaagtgagttctttcattccaaccaaattttatt---catgcacgattgtaaggaatcaaacttatgtccacttt |
32065841 |
T |
|
| Q |
130 |
catagggagttagtcaaaatgtatttgatctaagttcaaacaacatacattttacttaagtgttactcagatgacgtttgacctttacgccgtattaaat |
229 |
Q |
| |
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| || ||||||||||||| | |||||||||| | |||| || | ||||||||||||| ||||||||||| ||||||||| |||||||| || |||||||| |
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| T |
32065840 |
cttatggagttagtcaaatt-tatttgatctgaattcataccaaatacattttactttagtgttactcacatgacgttttacctttacaccatattaaat |
32065742 |
T |
|
| Q |
230 |
aatgagagataagtatttcatttgtctgtatt-ttttattgactggattaccatattcttcga |
291 |
Q |
| |
|
||||||||||||||| || |||| |||||||| ||||||||| |||||||||||||| ||||| |
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|
| T |
32065741 |
aatgagagataagtactttatttatctgtatttttttattgattggattaccatattattcga |
32065679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 91 - 285
Target Start/End: Complemental strand, 32066391 - 32066200
Alignment:
| Q |
91 |
tcatgcacgagtgtaaggaatcaaacatatgtccactttcatagggagttagtcaaaatgtatttgatctaagttcaaacaacatacattttacttaagt |
190 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||| | |||||||||| | ||| || | ||||||||||||| ||| |
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|
| T |
32066391 |
tcatgcacgattgtaaggaatcaaacatatgtccactttcttaaggagttagtcaaatt-tatttgatctgaattcggaccaaatacattttactttagt |
32066293 |
T |
|
| Q |
191 |
gttactcagatgacgtttgacctttacgccgtattaaataatgagagataagtatttcatttgtctgtattttttattgactggattaccatatt |
285 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||| | || |||||||||| |||| ||||||||||||||||||||| |
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|
| T |
32066292 |
gttacccatatgacgtttgacctttacgccgtattaaataatgagagataa--actttatttgtctgttttttatattgactggattaccatatt |
32066200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 91 - 290
Target Start/End: Complemental strand, 32073053 - 32072855
Alignment:
| Q |
91 |
tcatgcacgagtgtaaggaatcaaacatatgtccactttcatagggagttagtcaaaatgtatttgatctaagttcaaacaacatacattttacttaagt |
190 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||| || ||||||||||||| |||||||||||| | ||| || | |||||||||||| ||| |
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|
| T |
32073053 |
tcatgcactagtgtaaagaatcaaacatatgtccactttcttaaggagttagtcaaa-tgtatttgatctgaattcggaccaaatacattttactgtagt |
32072955 |
T |
|
| Q |
191 |
gttactcagatgacgtttgacctttacgccgtattaaataatgagagataagtatttcatttgtctgtattttttattgactggattaccatattcttcg |
290 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
32072954 |
gttactcatctgcagtttgacctttacgccgtattaaataataagagataagtactttatttgtctgtattttttattgactagattaccatattattcg |
32072855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 32065438 - 32065171
Alignment:
| Q |
16 |
ttaccatattatttactgtcggtgagtcaatagtgacacacaaagtgatctctccttccaaccaaattttaataatcatgcacgagtgtaaggaatcaaa |
115 |
Q |
| |
|
||||||||||||| ||||| ||||||||| |||||||| | | || |||||||||||||||||| | |||||||||| ||||||||||||| |
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|
| T |
32065438 |
ttaccatattattcggtgtcgttgagtcaatggtgacacatga---gttccctccttccaaccaaattt----attcatgcacgatagtaaggaatcaaa |
32065346 |
T |
|
| Q |
116 |
catatgtccactttcatagggagttagtcaaaatgtatttgatctaagttcaaacaacatacattttacttaa-----gtgttactcagatgacgtttga |
210 |
Q |
| |
|
||| ||||||||||| || ||||||||||||| |||||||| ||| | |||| || | ||||||||||||| | |||||||| | |||||||||| |
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|
| T |
32065345 |
catttgtccactttcttaaggagttagtcaaa-tgtatttgttctgaattcagacgaaatacattttactttaatttagtgttactgatctgacgtttga |
32065247 |
T |
|
| Q |
211 |
cctttacgccgtattaaataatgagagataagtatttcatttgtctgtatt--ttttattgactggattaccatat |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32065246 |
cctttacgccgtattaaataatgagagataagtacgttatttgtctgtattttttttattgactggattaccatat |
32065171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 32065694 - 32065424
Alignment:
| Q |
16 |
ttaccatattatttactgtcggtgagtcaatagtgacacacaaagtga--tctctccttccaaccaaattttaataatcatgcacgagtgtaaggaatca |
113 |
Q |
| |
|
||||||||||||| | ||||||||| ||| |||||||||||| ||| | ||||||||||||||||| | | | ||||||||| |||||||||||| |
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|
| T |
32065694 |
ttaccatattattcgatttcggtgagtaaatggtgacacacaaaatgagttatctccttccaaccaaatatcatt---catgcacgattgtaaggaatca |
32065598 |
T |
|
| Q |
114 |
aacatatgtccactttcatagggagttagtcaaaatgtatttgatctaagttcaaacaacatacattttacttaagtgttactcagatgacgtttgacct |
213 |
Q |
| |
|
|||||||| |||||||| || ||||||||||||| | |||||| | | | ||| || | ||| ||||||||| ||||| ||||| ||||||||||||| |
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|
| T |
32065597 |
aacatatgcccactttcttaaggagttagtcaaatt-tatttgttttgaattcggaccaaataaattttactttagtgtaactcatctgacgtttgacct |
32065499 |
T |
|
| Q |
214 |
ttacgccgtattaaataatgagagataagtatttcatttgtctgtattttttattgactggattaccatattcttcg |
290 |
Q |
| |
|
||||| |||||||||||||||||||||| | || |||||||||| |||| ||||||||||||||||||||| |||| |
|
|
| T |
32065498 |
ttacgtcgtattaaataatgagagataa--actttatttgtctgttttttatattgactggattaccatattattcg |
32065424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 67 - 290
Target Start/End: Complemental strand, 32066674 - 32066451
Alignment:
| Q |
67 |
ctccttccaaccaaattttaataatcatgcacgagtgtaaggaatcaaacatatgtccactttcatagggagttagtcaaaatgtatttgatctaagttc |
166 |
Q |
| |
|
|||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||| || ||||||||||||| ||||| || ||| | ||| |
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|
| T |
32066674 |
ctccttccaaccaaattt----attcatgcacgattgtaaggaatcaaacatatgtccactttcttaaggagttagtcaaa-tgtatatgttctgaattc |
32066580 |
T |
|
| Q |
167 |
aaacaacatacattttacttaagtgttactcagatgacgtttgacctttacgccgtattaaataatgagagataagtatttcatttgtctgtat-----t |
261 |
Q |
| |
|
|| | || |||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| || |||||||| ||| | |
|
|
| T |
32066579 |
ggacgaaatgcattttactttagtgttactcatctgacgtttgaactttacgccgtattaaataatgagagataagtactttatttgtctatattattat |
32066480 |
T |
|
| Q |
262 |
ttttattgactggattaccatattcttcg |
290 |
Q |
| |
|
||||||| |||||||||||| ||| |||| |
|
|
| T |
32066479 |
ttttattcactggattaccacattattcg |
32066451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 97 - 291
Target Start/End: Complemental strand, 32066135 - 32065938
Alignment:
| Q |
97 |
acgagtgtaaggaatcaaacatatgtccactttcatagggagttagtcaaaatgtatttgatctaagttcaaacaacatacattttacttaagtgttact |
196 |
Q |
| |
|
|||| |||||| | |||||||||||||||||||| || ||||||||||||| ||||||| ||| | ||| || | ||||||||||||| ||||||||| |
|
|
| T |
32066135 |
acgattgtaagtactcaaacatatgtccactttcttaaggagttagtcaaa-tgtattttttctgaattcggacgaaatacattttactttagtgttact |
32066037 |
T |
|
| Q |
197 |
cagatgacgtttgacctttacgccgtattaaataatgagagataagtatttcatttgtctgta----ttttttattgactggattaccatattcttcga |
291 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||||||||| || |||||||| || ||||||||||||||||||| |||||| ||||| |
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|
| T |
32066036 |
catctgacgtttgacctttacgccatattaaataatgagagataagtactttatttgtctatattatttttttattgactggattatcatattattcga |
32065938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 174 - 290
Target Start/End: Complemental strand, 32066822 - 32066708
Alignment:
| Q |
174 |
atacattttacttaagtgttactcagatgacgtttgacctttacgccgtattaaataatgagagataagtatttcatttgtctgtattttttattgactg |
273 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||| | || |||||| ||| |||| ||||||||| |
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|
| T |
32066822 |
atacattttactttagtgttactcatctgacgtttgaactttacgccgtattaaataatgagagataa--actttatttgtttgttttttatattgactg |
32066725 |
T |
|
| Q |
274 |
gattaccatattcttcg |
290 |
Q |
| |
|
|| ||||||||| |||| |
|
|
| T |
32066724 |
gagtaccatattattcg |
32066708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 32065163 - 32065056
Alignment:
| Q |
32 |
tgtcggtgagtcaatagtgacacacaaagtga--tctctccttccaaccaaattttaataatcatgcacgagtgtaaggaatcaaacatatgtccacttt |
129 |
Q |
| |
|
|||| |||||||||| ||||||||| |||||| ||||| ||||||||||||||||| | ||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
32065163 |
tgtcagtgagtcaatggtgacacacgaagtgagttctcttcttccaaccaaattttatt---catgcacgagtgtaaagaatcaaacatatatccacttt |
32065067 |
T |
|
| Q |
130 |
catagggagtt |
140 |
Q |
| |
|
| || |||||| |
|
|
| T |
32065066 |
cttaaggagtt |
32065056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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