View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_104 (Length: 296)

Name: NF8180A_low_104
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_104
NF8180A_low_104
[»] chr5 (6 HSPs)
chr5 (2-284)||(29712739-29713021)
chr5 (2-221)||(29687640-29687859)
chr5 (34-241)||(29695721-29695928)
chr5 (127-196)||(42562726-42562795)
chr5 (130-192)||(1812043-1812105)
chr5 (130-191)||(178638-178699)
[»] chr1 (5 HSPs)
chr1 (93-191)||(24309796-24309894)
chr1 (130-205)||(24322067-24322142)
chr1 (67-192)||(24340032-24340157)
chr1 (133-191)||(24415456-24415514)
chr1 (130-178)||(24366787-24366835)
[»] chr8 (5 HSPs)
chr8 (69-192)||(15348480-15348603)
chr8 (129-215)||(12199902-12199988)
chr8 (129-215)||(12444330-12444416)
chr8 (129-215)||(12194896-12194982)
chr8 (129-215)||(12439324-12439410)
[»] chr4 (31 HSPs)
chr4 (94-209)||(48156789-48156904)
chr4 (81-192)||(48862859-48862973)
chr4 (69-188)||(7774166-7774285)
chr4 (67-192)||(48735647-48735775)
chr4 (69-186)||(7877344-7877461)
chr4 (97-185)||(7904657-7904745)
chr4 (96-206)||(45366582-45366695)
chr4 (97-208)||(48148047-48148161)
chr4 (94-209)||(45372419-45372534)
chr4 (102-185)||(49044599-49044682)
chr4 (96-188)||(7771026-7771118)
chr4 (126-186)||(49048993-49049053)
chr4 (94-188)||(7907947-7908041)
chr4 (129-191)||(33134223-33134285)
chr4 (94-192)||(48891027-48891125)
chr4 (95-192)||(7765239-7765336)
chr4 (130-190)||(48870162-48870222)
chr4 (130-190)||(48885848-48885908)
chr4 (129-188)||(7813102-7813161)
chr4 (129-188)||(7822591-7822650)
chr4 (94-185)||(49041500-49041591)
chr4 (96-188)||(7789711-7789803)
chr4 (98-185)||(7238086-7238173)
chr4 (129-188)||(7800259-7800318)
chr4 (129-184)||(33133663-33133718)
chr4 (81-192)||(48170935-48171049)
chr4 (97-182)||(48875474-48875559)
chr4 (89-185)||(37827351-37827447)
chr4 (127-190)||(48898342-48898405)
chr4 (133-188)||(48902572-48902627)
chr4 (95-188)||(7786065-7786158)
[»] scaffold0508 (1 HSPs)
scaffold0508 (93-192)||(11880-11979)
[»] chr6 (1 HSPs)
chr6 (90-192)||(21015394-21015496)
[»] chr3 (4 HSPs)
chr3 (129-192)||(11024934-11024997)
chr3 (129-188)||(11006359-11006418)
chr3 (129-192)||(11015922-11015985)
chr3 (129-188)||(47452304-47452363)


Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 2 - 284
Target Start/End: Original strand, 29712739 - 29713021
Alignment:
Q  2 cactatcatcgtagagtgatgtttccaaatcaatagatagagattccagatttggagttatcaatagaattctaggagcgtgtgttttggcagtaagttg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29712739 cactatcatcgtagagtgatgtttccaaatcaatagatagagattccagatttggagttatcaatagaattctaggagcgtgtgttttggcggtaagttg 29712838  T
Q  102 aaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaagg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712839 aaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaagg 29712938  T
Q  202 atttgaatgattaactcaatagatagatattgctctgtcttcttcatcgtctccattcacacgtttcctcctttgccaatatt 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712939 atttgaatgattaactcaatagatagatattgctctgtcttcttcatcgtctccattcacacgtttcctcctttgccaatatt 29713021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 29687859 - 29687640
Alignment:
Q  2 cactatcatcgtagagtgatgtttccaaatcaatagatagagattccagatttggagttatcaatagaattctaggagcgtgtgttttggcagtaagttg 101  Q
    ||||||||||||  || |||||||| ||||| |||||||||||||| |||| |||| |||| || ||||||||||||| |||||  ||||| ||||||||    
T  29687859 cactatcatcgtgaagcgatgtttcaaaatctatagatagagattcaagatctggatttatgaacagaattctaggagtgtgtgcattggcggtaagttg 29687760  T
Q  102 aaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaagg 201  Q
    |||||| |||||||| || | || |||||| || |||||||||||  |||||||||| |||||||| || |||||||||||||| |||||| ||| ||||    
T  29687759 aaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactggtaactttagaagg 29687660  T
Q  202 atttgaatgattaactcaat 221  Q
    ||||||||||| || |||||    
T  29687659 atttgaatgatcaattcaat 29687640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 241
Target Start/End: Complemental strand, 29695928 - 29695721
Alignment:
Q  34 atagatagagattccagatttggagttatcaatagaattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagaga 133  Q
    |||||||||||||  |||| |||||||||||| | |||||||   | ||||||   ||  ||||||||||||||||||||||| || | || |||||| |    
T  29695928 atagatagagattgaagatatggagttatcaacataattctattcgtgtgtgtagcggtggtaagttgaaaatgtgaatttgcaaagtgaggttgagata 29695829  T
Q  134 taagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaactcaatagatagatattg 233  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||| || |||||| |||| |||||||||||||||||||||| ||  ||||||      
T  29695828 taagagataaccataacttacaaacgcatttgaaacgaataagagacttgactggtaaccttaataggatttgaatgattaactcaaaaggaagatatgt 29695729  T
Q  234 ctctgtct 241  Q
    ||||||||    
T  29695728 ctctgtct 29695721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 42562726 - 42562795
Alignment:
Q  127 tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacatta 196  Q
    |||||||| |||||||||||  ||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  42562726 tgagagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtaacatta 42562795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 1812105 - 1812043
Alignment:
Q  130 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 192  Q
    ||||||||||||||||||||||||||||| || ||| |||| || ||| ||||||| ||||||    
T  1812105 gagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaac 1812043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 178699 - 178638
Alignment:
Q  130 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 191  Q
    ||||| ||||| |||||  |||||||||| || |||||||||||||||||||| || |||||    
T  178699 gagatgagagataaccaagacttacaaacacatttgaaacgaataagagacttaactggtaa 178638  T

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Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 24309894 - 24309796
Alignment:
Q  93 agtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 191  Q
    |||||||||||||||||||||||| || | ||| | ||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  24309894 agtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaa 24309796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 24322142 - 24322067
Alignment:
Q  130 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggattt 205  Q
    |||||||||||||||||  ||||||||||||| |||||||||||||||||||||||| | ||| ||| ||||||||    
T  24322142 gagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcaccagcaaccttagaaggattt 24322067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 192
Target Start/End: Complemental strand, 24340157 - 24340032
Alignment:
Q  67 agaattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttga 166  Q
    ||||||||| ||| |||||||   ||||||| |||||| ||||||||||| || | |   | ||||||||| ||||||||| ||||||||||  | ||||    
T  24340157 agaattctaagagtgtgtgttgcagcagtaacttgaaagtgtgaatttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttga 24340058  T
Q  167 aacgaataagagacttcaccggtaac 192  Q
    |||||||||||||||| |||||||||    
T  24340057 aacgaataagagacttaaccggtaac 24340032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 24415514 - 24415456
Alignment:
Q  133 ataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 191  Q
    ||||||||||||||  |||||| |||||| |||||||||||||||||||| ||||||||    
T  24415514 ataagagaaaaccaagacttacgaacgcatttgaaacgaataagagacttaaccggtaa 24415456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 24366835 - 24366787
Alignment:
Q  130 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagag 178  Q
    |||||||||||||||||| |||| ||||| || ||||||||||| ||||    
T  24366835 gagataagagaaaaccatgacttgcaaacacatttgaaacgaatcagag 24366787  T

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Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 69 - 192
Target Start/End: Complemental strand, 15348603 - 15348480
Alignment:
Q  69 aattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaa 168  Q
    ||||||| ||| |||||||  ||| |||| ||||||||||||||||||||| | ||  | ||||||||||||||||||  ||||||||||||| ||||||    
T  15348603 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 15348504  T
Q  169 cgaataagagacttcaccggtaac 192  Q
    || |||||||||||||||||||||    
T  15348503 cgtataagagacttcaccggtaac 15348480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 12199988 - 12199902
Alignment:
Q  129 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 215  Q
    ||||||||||||||||||| |||||||||| || |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12199988 agagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12199902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 12444416 - 12444330
Alignment:
Q  129 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 215  Q
    ||||||||||||||||||| |||||||||| || |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12444416 agagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12444330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 12194982 - 12194896
Alignment:
Q  129 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 215  Q
    |||||||||||| |||||| ||||||||| ||| |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12194982 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12194896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 12439410 - 12439324
Alignment:
Q  129 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 215  Q
    |||||||||||| |||||| ||||||||| ||| |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12439410 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12439324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 48156789 - 48156904
Alignment:
Q  94 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaaca 193  Q
    |||| ||||||||| |||||||| |||| ||  |  |||||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||     
T  48156789 gtaatttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaacc 48156888  T
Q  194 ttaaaaggatttgaat 209  Q
     |||||||||||||||    
T  48156889 ataaaaggatttgaat 48156904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 192
Target Start/End: Complemental strand, 48862973 - 48862859
Alignment:
Q  81 gtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcag-at--tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataaga 177  Q
    |||||||  ||||||||||||||||||||||||||| || | || ||  ||||||||||||||||||||  |||| |||||||| |||||||||||||||    
T  48862973 gtgtgttgcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataaga 48862874  T
Q  178 gacttcaccggtaac 192  Q
    |||||||||||||||    
T  48862873 gacttcaccggtaac 48862859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 188
Target Start/End: Original strand, 7774166 - 7774285
Alignment:
Q  69 aattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaa 168  Q
    ||||||||||| ||| ||| |||  || |||||||||||||||||||| ||||  |  | |||||||||||||||||||| ||||||||| || ||||||    
T  7774166 aattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaa 7774265  T
Q  169 cgaataagagacttcaccgg 188  Q
     |||||||||||||||||||    
T  7774266 tgaataagagacttcaccgg 7774285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 192
Target Start/End: Original strand, 48735647 - 48735775
Alignment:
Q  67 agaattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattga---gagataagagaaaaccataacttacaaacgcact 163  Q
    ||||||||| ||| ||| ||| |||| |||| || ||||||||||||||| |||||||  | |   |||||||||||||||||  |||||||||| || |    
T  48735647 agaattctacgagtgtgggttatggcggtaatttcaaaatgtgaatttgcaaaatcagtatcacaggagataagagaaaaccaagacttacaaacacatt 48735746  T
Q  164 tgaaacgaataagagacttcaccggtaac 192  Q
    |||||||||||||||||||||||||||||    
T  48735747 tgaaacgaataagagacttcaccggtaac 48735775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 7877461 - 7877344
Alignment:
Q  69 aattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaa 168  Q
    ||||||||||| ||| ||| |||  || |||||||||||||||||||| ||||  |  | |||||||||||||||||||| |||||||| ||| ||||||    
T  7877461 aattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaa 7877362  T
Q  169 cgaataagagacttcacc 186  Q
    || |||||||||||||||    
T  7877361 cgtataagagacttcacc 7877344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 185
Target Start/End: Complemental strand, 7904745 - 7904657
Alignment:
Q  97 agttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 185  Q
    |||||||||||||||||||| || | ||  | |||||||||||||||||||||||||||||| || |||||||| ||||||||||||||    
T  7904745 agttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcac 7904657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 96 - 206
Target Start/End: Original strand, 45366582 - 45366695
Alignment:
Q  96 aagttgaaaatgtgaatttgcgaaatcagatt---gagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 192  Q
    ||||||||||||||||||||| || |  || |   |||||||||||||||||||  |||||||||||||||||||||| |||||||||||||| ||||||    
T  45366582 aagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaac 45366681  T
Q  193 attaaaaggatttg 206  Q
     |||  ||||||||    
T  45366682 cttagtaggatttg 45366695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 48148047 - 48148161
Alignment:
Q  97 agttgaaaatgtgaatttgcgaaatcag-at--tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaaca 193  Q
    |||| |||||||||||||||||| | || ||  ||||||||||||||||||||  ||||||| || || ||||||||||||||||||||||| ||||||     
T  48148047 agttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaacgaataagagacttcactggtaacc 48148146  T
Q  194 ttaaaaggatttgaa 208  Q
    || ||||||||||||    
T  48148147 ttgaaaggatttgaa 48148161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 45372419 - 45372534
Alignment:
Q  94 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaaca 193  Q
    |||| |||||||||||||||||| |||| ||  | |||||||| |||||||||  |||||||||| || |||||||| ||||||||||||||||| |||     
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaacc 45372518  T
Q  194 ttaaaaggatttgaat 209  Q
    |||  || ||||||||    
T  45372519 ttagtagaatttgaat 45372534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 185
Target Start/End: Original strand, 49044599 - 49044682
Alignment:
Q  102 aaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 185  Q
    ||||||||||||||| || |  | ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||    
T  49044599 aaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcac 49044682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 7771118 - 7771026
Alignment:
Q  96 aagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 188  Q
    ||||||||||||||||||| | || | ||  | ||||||||||||||||||  ||||||||||||| |||||||  |||||||||||||||||    
T  7771118 aagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccgg 7771026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 49048993 - 49049053
Alignment:
Q  126 ttgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcacc 186  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||||    
T  49048993 ttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcacc 49049053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 188
Target Start/End: Complemental strand, 7908041 - 7907947
Alignment:
Q  94 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 188  Q
    ||||||||||||||||||||||| ||||  |    ||||||||||||||||||| |||||| |||  ||||||||||  ||||||||||||||||    
T  7908041 gtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccgg 7907947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 33134223 - 33134285
Alignment:
Q  129 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 191  Q
    ||||||||||||||| ||   |||||||||||| |||||||||||||||||||||||||||||    
T  33134223 agagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccggtaa 33134285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 48891125 - 48891027
Alignment:
Q  94 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 192  Q
    |||||||||||||| |||||||| |||| ||  |  |||| ||||||||||||  ||||||||||||| |||||||| ||||||||||| |||| ||||    
T  48891125 gtaagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataac 48891027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 7765336 - 7765239
Alignment:
Q  95 taagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 192  Q
    ||||||| |||||||||||||| || | ||  | |||||||| |||||||||||||||||||| ||||||||||   |  ||||||||||||||||||    
T  7765336 taagttggaaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaac 7765239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 48870222 - 48870162
Alignment:
Q  130 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 190  Q
    ||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||||||||||    
T  48870222 gagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggta 48870162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 48885908 - 48885848
Alignment:
Q  130 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 190  Q
    ||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||||||||||    
T  48885908 gagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggta 48885848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 7813161 - 7813102
Alignment:
Q  129 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 188  Q
    ||||||||||||||||||| | |||||||| ||||||||||| |||||| ||||||||||    
T  7813161 agagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7813102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 7822650 - 7822591
Alignment:
Q  129 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 188  Q
    ||||||||||||||||||| | |||||||| ||||||||||| |||||| ||||||||||    
T  7822650 agagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7822591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 49041500 - 49041591
Alignment:
Q  94 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 185  Q
    ||||||| |||||| |||||||| ||||  |  | ||||||||||||||||||  |||| |||||||| ||||||| |||||||||||||||    
T  49041500 gtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcac 49041591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 7789803 - 7789711
Alignment:
Q  96 aagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 188  Q
    ||||||||||||||||||| | || | ||  |  ||||||| |||||||||  ||||||||||||| |||||||  |||||||||||||||||    
T  7789803 aagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccgg 7789711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 7238086 - 7238173
Alignment:
Q  98 gttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 185  Q
    |||| |||||||||||||| || | ||  | ||||||||||||||||||  |||||||||| || |||||||  ||||||||||||||    
T  7238086 gttggaaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcac 7238173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 7800318 - 7800259
Alignment:
Q  129 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 188  Q
    ||||| ||||||||||||| | |||||||| ||||||||||| |||||| ||||||||||    
T  7800318 agagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7800259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 33133718 - 33133663
Alignment:
Q  129 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttca 184  Q
    |||||||||||||||||| | |||||||| | | ||||||||||||||||||||||    
T  33133718 agagataagagaaaaccaaagcttacaaatgaatttgaaacgaataagagacttca 33133663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 192
Target Start/End: Original strand, 48170935 - 48171049
Alignment:
Q  81 gtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcag-at--tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataaga 177  Q
    |||||||| ||| |||| ||||||||| |||||||| || | || ||  ||||||||||||| ||||||  |||||||||| || |||||||| | ||||    
T  48170935 gtgtgtttaggcggtaatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacacatttgaaacgtagaaga 48171034  T
Q  178 gacttcaccggtaac 192  Q
    |||||||||| ||||    
T  48171035 gacttcaccgataac 48171049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 48875559 - 48875474
Alignment:
Q  97 agttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagactt 182  Q
    |||||||||||||||||||  ||||  | ||  ||||| |||||||||||  |||| |||||||| ||||||||||| ||||||||    
T  48875559 agttgaaaatgtgaatttgtaaaatggggttcggagatgagagaaaaccaagacttgcaaacgcatttgaaacgaattagagactt 48875474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 37827351 - 37827447
Alignment:
Q  89 tggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 185  Q
    |||| ||||||||||||||||||||||| || || |  | ||| |||||||  |||||| |||||||||||||  | ||||  ||||||||||||||    
T  37827351 tggccgtaagttgaaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaacgcatgtaaaacttataagagacttcac 37827447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 48898405 - 48898342
Alignment:
Q  127 tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 190  Q
    ||||||||||| || |||||  |||||||||| |||||||||||  ||||||||||||| ||||    
T  48898405 tgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcacaggta 48898342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 48902627 - 48902572
Alignment:
Q  133 ataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 188  Q
    ||||||||||||||  |||||||||| || ||||||||||| |||||||| |||||    
T  48902627 ataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccgg 48902572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 188
Target Start/End: Complemental strand, 7786158 - 7786065
Alignment:
Q  95 taagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 188  Q
    ||||||| |||||||||||||| || | ||  | |||||||| ||||| ||||| |||||||||||| |||||    |||||||| ||||||||    
T  7786158 taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaacgcatttgaacaatataagagatttcaccgg 7786065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 192
Target Start/End: Complemental strand, 11979 - 11880
Alignment:
Q  93 agtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 192  Q
    |||||||||||||||||||||||| || | |   | ||||||||||||||||||| ||||||||||| | |||||||| ||||||||||| | |||||||    
T  11979 agtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaatcggtaac 11880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 90 - 192
Target Start/End: Complemental strand, 21015496 - 21015394
Alignment:
Q  90 ggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggt 189  Q
    |||||||| || |||||||||| |||| || |  | ||||||||||||||||||| ||||||||||||| ||||||||||| | ||||||| | ||||||    
T  21015496 ggcagtaatttcaaaatgtgaaattgcaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggt 21015397  T
Q  190 aac 192  Q
    |||    
T  21015396 aac 21015394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 11024934 - 11024997
Alignment:
Q  129 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 192  Q
    |||||||||||  |||||| ||||||||||||| |||||||| || ||||||||||||||||||    
T  11024934 agagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaac 11024997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 11006359 - 11006418
Alignment:
Q  129 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 188  Q
    |||||||||||  |||||| |||||||||| ||||||||||| ||||| |||||||||||    
T  11006359 agagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccgg 11006418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 11015922 - 11015985
Alignment:
Q  129 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 192  Q
    |||||||||||  ||| || ||||||||||||| |||||||| || ||||||||||||||||||    
T  11015922 agagataagagctaacaatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaac 11015985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 47452304 - 47452363
Alignment:
Q  129 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 188  Q
    ||||||||||||||||||| ||||| ||| ||||||||| || | |||||||||||||||    
T  47452304 agagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccgg 47452363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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