View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_109 (Length: 294)
Name: NF8180A_low_109
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_109 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 5 - 282
Target Start/End: Complemental strand, 26035888 - 26035611
Alignment:
| Q |
5 |
gtaatggctaaactatagagtgaaaaccacctcgtcaagctgtttggttgactttgaaggaactttcgtgacctctaatccaagagtttcaattttagaa |
104 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26035888 |
gtaatggctaaactatggagtgaaaaccacctcgtcaagctgtttggttgactttgaaggaactttcgtgacctctaatccaagagtttcaattttagaa |
26035789 |
T |
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| Q |
105 |
cgcagttcaacttcttcttgattcgtcaatgcttctacctacggattttatcattagatatatgtgaatatatatagcaaaattggtaagaaattaaact |
204 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26035788 |
cgcagttcaacttcttcttgattcgtcagtgcttctacctacagattttatcattagacatatgtgaatatatatagcaaaattggtaagaaattaaact |
26035689 |
T |
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| Q |
205 |
actggtgaaatccagagaaactgcatgcacagtcttgtttttgtatacgttctaagtctaaatgcctaataatagaat |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
26035688 |
actggtgaaatccagagaaactgcatgcacagtcttgtttttgtatacattttaagtctaaatgcctaataatagaat |
26035611 |
T |
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