View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_114 (Length: 292)
Name: NF8180A_low_114
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_114 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 7 - 286
Target Start/End: Original strand, 4631949 - 4632228
Alignment:
| Q |
7 |
tttggtgtttatgcaaaggaggtgaatcaaatatgctcttttcatgcttgttagaagaaacaaacccggaaaccgaagctgctccattaatatgtttcaa |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4631949 |
tttgttgtttatgcaaaggaggtgaatcaaatatgctcttttcatgcttgttagaagaaacaaacctggaaaccgaagctgctccattaatatgtttcaa |
4632048 |
T |
|
| Q |
107 |
agctgatccatgacttgattttcccttagaattcaaattctccttgttcatcaaactcttatcatctttcaaatcaatcacataccattcctcttcagaa |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4632049 |
agctgatccatgacttgattttcccttagaattcaaattctccttgttcatcaaactcttatcatctttcaaatcaatcacataccatttctcttcagaa |
4632148 |
T |
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| Q |
207 |
ttctcttttaaatctttcgatttccctacgatcacgtctctagcatcagaacttgtgagatagttttagagattttatag |
286 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4632149 |
ttctcttttaaatctttcgatttcccggcgatcacgtctctagcatcagaacttgtgagatagttttagagattttatag |
4632228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 48250211 - 48250458
Alignment:
| Q |
7 |
tttggtgtttatgcaaaggaggtgaatcaaatatgctcttttcatgcttgttagaagaaacaaacccggaaaccgaagctgctccattaatatgtttcaa |
106 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| |||||||||||||||| ||||| |||||||| |
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| T |
48250211 |
tttgttgtttatgcaaaggaggtgaatcaaatatactcttttcatgtttgtttgaagatacaaacccaaaaaccgaagctgctcctttaatctgtttcaa |
48250310 |
T |
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| Q |
107 |
agctgatccatgacttgattttcccttagaattcaaattctccttgttcatcaaactcttatcatctttcaaatcaatcacataccattcctcttcagaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||| |
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| T |
48250311 |
agctgatccatgacttgattttcccttagaattcaaattctccttgttcatcaaactcttatcatctttcaagtcaatcacagaccactcctcttcagaa |
48250410 |
T |
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| Q |
207 |
ttctcttttaaatctttcgatttccctacgatcacgtctctagcatca |
254 |
Q |
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|||||||| ||||||||||||||||| | |||||||||||||||||| |
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| T |
48250411 |
ttctctttcaaatctttcgatttccccgcaatcacgtctctagcatca |
48250458 |
T |
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