View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_117 (Length: 289)
Name: NF8180A_low_117
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_117 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 283
Target Start/End: Original strand, 1133000 - 1133273
Alignment:
| Q |
11 |
atactattactagcttaggaccacttcatgaaaagtaaatatagagtgatacatatttgttaagagtctattggctaagtacctaataaatgcaatgcat |
110 |
Q |
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| T |
1133000 |
atactattactagcttaggaccacttcatgaaaagtaaatatagagtgatacatatttgttaagagtctattggctaactacctaatagatgcaatgcat |
1133099 |
T |
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| Q |
111 |
gggggataattttcttatagaaggccaaaggaatgacccatatt-ctctattatattccttttctattcattttttaccatcttccttttcaatttgtca |
209 |
Q |
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| T |
1133100 |
gggagataattttcttatagaaggccaaaggaatgacccatgttgctctattatattccttttctattcattttttaccatattccttttcaatttgtca |
1133199 |
T |
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| Q |
210 |
cttgtaaaacaagtgannnnnnnaatagtgtttcattgaaaatatataatagaaaagaagagagagattgctat |
283 |
Q |
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| T |
1133200 |
cttgtaaaacaagtgatttttttaatagtgtttgattgaaaatatataatagaaaagaagagagggattgctat |
1133273 |
T |
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