View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_119 (Length: 289)
Name: NF8180A_low_119
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_119 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 482308 - 482594
Alignment:
| Q |
1 |
tcagaagcatactctattattaccttggttcaggcttctttgaagaaggaactgcagcatctatcccaacacaacgtaaatgttttgccaagccttcaac |
100 |
Q |
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| T |
482308 |
tcagaagcatactctattattaccttggttcaggcttctttgaagaaggaactgcagcatctatcccaacacaacgtaaatgttttgccaagccttcaac |
482407 |
T |
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| Q |
101 |
ctgagtaaattccttaccagatccatgctcatatttaaattttataaatacacaatctttcaaattgttcattaaaataaaatcccctttctttttggat |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
482408 |
ctgagtaaattccttaccagattcatgctcatatttaaattttataaatacacaatcattcaaattgttcattaaaataaaatcccctttctttttggat |
482507 |
T |
|
| Q |
201 |
aacatgtttcaattatatattcataaaacagaagtcaaaatattgacactgataacgatgcaaatggctcatatattgttggagatcc |
288 |
Q |
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| T |
482508 |
-atatgtttcaattatatattcataaaacagaagtcaaaatattgacactgataacgatgcaaatggctcatatattgttggaaatcc |
482594 |
T |
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