View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_121 (Length: 287)
Name: NF8180A_low_121
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_121 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 29013500 - 29013767
Alignment:
| Q |
14 |
gaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaagatcatgaaaatttggatcagagtt |
113 |
Q |
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| T |
29013500 |
gaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaagatcatgaaaatttggatcagagtt |
29013599 |
T |
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| Q |
114 |
atcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggatcaacccaaccaata |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29013600 |
atcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggatcaacccaaccaata |
29013699 |
T |
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| Q |
214 |
gcataccattgacgtttccatagtgaatgtgatgctcttactccacgagctgatattatgcatatttc |
281 |
Q |
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| T |
29013700 |
gcataccattgacgtttccatagtgaatgtgatgctcttactccacgagctgatattatgcatatttc |
29013767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 29366188 - 29366455
Alignment:
| Q |
14 |
gaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaagatcatgaaaatttggatcagagtt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366188 |
gaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaagatcatgaaaatttggatcagagtt |
29366287 |
T |
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| Q |
114 |
atcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggatcaacccaaccaata |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366288 |
atcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggatcaacccaaccaata |
29366387 |
T |
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| Q |
214 |
gcataccattgacgtttccatagtgaatgtgatgctcttactccacgagctgatattatgcatatttc |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
29366388 |
gcataccattgacgtttccatagtgaatgtgatgctcttactcctcgagctgatattaagcatatttc |
29366455 |
T |
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