View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8180A_low_126 (Length: 285)
Name: NF8180A_low_126
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_126 |
 | |
|
| [»] scaffold0067 (2 HSPs) |
| | |
|
| [»] scaffold0039 (2 HSPs) |
| | |
|
| [»] scaffold0027 (1 HSPs) |
| | |
|
| [»] scaffold0079 (1 HSPs) |
| | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 4 - 277
Target Start/End: Original strand, 23469417 - 23469690
Alignment:
| Q |
4 |
aaagacgaattctcatagtagaagtttaaaggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgat |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| |||||| ||| |
|
|
| T |
23469417 |
aaagacgaattctcatagtagaagtttaaaggattgcatgaaagcttgagattcgaagaccatgtggttgtccgatttcaagaggtcttaaagattggat |
23469516 |
T |
|
| Q |
104 |
cgtgtgtgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatacacttgtagacattttcatcatagcggaagaccgtgatagagg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23469517 |
cgtgtgtgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatacacttgtagacattttcatcatagcggaagaccgtgataga-g |
23469615 |
T |
|
| Q |
204 |
tgttttctatcacatagatgatgtactcataacgaggatg-aaagggtgaacctctacaaatctcgatattcttc |
277 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||| |||||||| |||||||| |||||||| |
|
|
| T |
23469616 |
cattttctatcacagagatgatgtactcataacgaggatgaaaaggggaaacctctataaatctcggtattcttc |
23469690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 66 - 216
Target Start/End: Original strand, 29798915 - 29799066
Alignment:
| Q |
66 |
tgtggctgtccaatttcaagaggtcttgaagatttgatcgtgtgtgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatacactt |
165 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| |||| ||||||||||||||||||||||| || |
|
|
| T |
29798915 |
tgtgggtgtccaatttcaagaggtcttgaagattggatcttgtgtgattgtttagcatagaagatttgagaattgaatgaatctttgtaattatacattt |
29799014 |
T |
|
| Q |
166 |
gtagacatt-ttcatcatagcggaagaccgtgatagaggtgttttctatcac |
216 |
Q |
| |
|
|| ||||| || ||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
29799015 |
gtctacattattaatcatagtggaagaccgtgatataggtgttttctatcac |
29799066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 17502514 - 17502372
Alignment:
| Q |
16 |
tcatagtagaagtttaaaggattgcatggaagcttgagattcgaagaccatgtgg-ctgtccaatttcaagaggtcttgaagatttgat--cgtgtgtga |
112 |
Q |
| |
|
|||||||||||| | |||| |||||||| ||||||||| ||| |||||| | ||| ||| |||||||||||| |||||||||| ||| | ||||||| |
|
|
| T |
17502514 |
tcatagtagaagatcaaagaattgcatgcaagcttgaggttcaaagaccttatggattgttcaatttcaagagagcttgaagattagattccatgtgtga |
17502415 |
T |
|
| Q |
113 |
ttgcttagcatagaagattaatgaatcgaatgaatctttgtaat |
156 |
Q |
| |
|
||||| ||||| ||| ||| | |||||||| |||||||| |||| |
|
|
| T |
17502414 |
ttgctaagcattgaatattga-gaatcgaaggaatctttctaat |
17502372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 7e-52; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 4 - 183
Target Start/End: Complemental strand, 20685478 - 20685300
Alignment:
| Q |
4 |
aaagacgaattctcatagtagaagtttaaaggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgat |
103 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||| ||||||||| |||||||| | | ||||||||||| |||||||||| ||||||||| ||| |
|
|
| T |
20685478 |
aaagacgaattctcaaagtagaagttcaaaggattgcatgcaagcttgaggttcgaagatcttatggctgtccaaattcaagaggttttgaagattggat |
20685379 |
T |
|
| Q |
104 |
cgtgtgtgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatacacttgtagacattttcatcata |
183 |
Q |
| |
|
| |||||||||||||||||||||| ||| | |||||||| ||||||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
20685378 |
cttgtgtgattgcttagcatagaacatt-aggaatcgaaagaatctttgtattcatacacttgtaaacattttcatcata |
20685300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 34 - 216
Target Start/End: Complemental strand, 29388893 - 29388712
Alignment:
| Q |
34 |
ggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgatcgtgtgtgattgcttagcatagaagattaa |
133 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| |||| ||||| ||||||||||| |||||||||| |||| |||||||||||||||||||||||||| | |
|
|
| T |
29388893 |
ggattgcatgcaagctctagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaagatt-a |
29388795 |
T |
|
| Q |
134 |
tgaatcgaatgaatctttgtaattatacacttgtagacattttcatcatagcggaagaccgtgatagaggtgttttctatcac |
216 |
Q |
| |
|
||||||||| |||||||||| || ||||| ||||| ||||||||||||||| ||||| |||||||||| ||||||| |||||| |
|
|
| T |
29388794 |
tgaatcgaaagaatctttgttatcatacatttgtacacattttcatcatagtggaagcccgtgatagaagtgttttttatcac |
29388712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 18450463 - 18450631
Alignment:
| Q |
20 |
agtagaagtttaaaggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgatcgtgtgtgattgctta |
119 |
Q |
| |
|
|||||||| | ||||||||||||| ||||||||||||| |||| | ||||||||| ||||||||||| ||||||||||| |||| |||||||||||||| |
|
|
| T |
18450463 |
agtagaagatcaaaggattgcatgcaagcttgagattcaaagatcttgtggctgtgtaatttcaagagttcttgaagattggatcttgtgtgattgctta |
18450562 |
T |
|
| Q |
120 |
gcatagaagattaatgaatcgaatgaatctttgtaattatacacttgtagacattttcatcatagcggaa |
189 |
Q |
| |
|
|||||||||||| | |||||||| |||||||||||| ||||||||||| | ||||||||||||| |||| |
|
|
| T |
18450563 |
gcatagaagatt-aggaatcgaagaaatctttgtaatcatacacttgtaaatattttcatcatagtggaa |
18450631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 14756096 - 14755935
Alignment:
| Q |
31 |
aaaggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgatcgtgtgtgattgcttagcatagaagat |
130 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| | ||||| || |||||||||| |||||||||| ||| |||||||||||| |||| | ||| |
|
|
| T |
14756096 |
aaaggattgcatgcatgcttgagattcgaagaccttttggctacccgatttcaagagagcttgaagattgaatctagtgtgattgcttgacataaatgat |
14755997 |
T |
|
| Q |
131 |
ta--atgaatcgaatgaatctttgtaattatacacttgtagacattttcatcatagcggaag |
190 |
Q |
| |
|
|| | ||||||| |||||||||||| ||||||||||| ||||||||||||||| ||||| |
|
|
| T |
14755996 |
taggaggaatcgatgaaatctttgtaatcatacacttgtaaacattttcatcatagtggaag |
14755935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 16722049 - 16722128
Alignment:
| Q |
88 |
gtcttgaagatttgatcgtgtgtgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatacacttgt |
167 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||| |||| ||||||| ||||||||||||| |||||||||| |
|
|
| T |
16722049 |
gtcttgaagattggatcttgtgtgattgcttagcatagaaaattaggaaatcgaaggaatctttgtaatcatacacttgt |
16722128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 40545562 - 40545613
Alignment:
| Q |
11 |
aattctcatagtagaagtttaaaggattgcatggaagcttgagattcgaaga |
62 |
Q |
| |
|
||||||| |||||||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
40545562 |
aattctcgaagtagaagttcaatggattgcatggaagcttgagatttgaaga |
40545613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 216
Target Start/End: Complemental strand, 14753425 - 14753212
Alignment:
| Q |
4 |
aaagacgaattctcatagtagaagtttaaaggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgat |
103 |
Q |
| |
|
||||||||||||| | |||||||||| |||||||||||||||||||||| |||||||||| ||||| |||||||| ||||||||||||||||||| || |
|
|
| T |
14753425 |
aaagacgaattcttagagtagaagttcaaaggattgcatggaagcttgatgttcgaagaccttgtgggtgtccaatatcaagaggtcttgaagattgaat |
14753326 |
T |
|
| Q |
104 |
cgtgtgtgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatacacttgtagaca-ttttcatcatagcggaagaccgtgatagag |
202 |
Q |
| |
|
| |||||||||||||| || | |||||| ||||| ||||||| |||||||| ||| ||||||| ||| |||||||||||| |||||||||||||| | |
|
|
| T |
14753325 |
cttgtgtgattgcttatcaaataagattggagaatcaaatgaatttttgtaatcatagacttgtaaacatttttcatcatagtggaagaccgtgataacg |
14753226 |
T |
|
| Q |
203 |
gtgttttctatcac |
216 |
Q |
| |
|
||||||||||||| |
|
|
| T |
14753225 |
atgttttctatcac |
14753212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 215
Target Start/End: Complemental strand, 21487285 - 21487108
Alignment:
| Q |
31 |
aaaggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgatcgtgtgtgattgcttagcatagaagat |
130 |
Q |
| |
|
||||||||| ||| ||| || ||||| ||| ||| | ||| ||||||||||||||||||||| |||||| |||| | ||||||| |||||||||||| |
|
|
| T |
21487285 |
aaaggattgaatgaaagattaagatttgaaaaccttatgggtgtccaatttcaagaggtctttaagattggatcttctgtgatttcttagcatagaa--- |
21487189 |
T |
|
| Q |
131 |
taatgaatcgaatgaatctttgtaattatacacttgtagacatttt-catcatagcggaagaccgtgatagaggtgttttctatca |
215 |
Q |
| |
|
|||| || ||||||||||||| ||||||||||| ||||||| |||||||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
21487188 |
-----aatccaaggaatctttgtaatcatacacttgtaaacatttttcatcatagtagaagaccatgataaaggtgttttctatca |
21487108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 4 - 216
Target Start/End: Complemental strand, 18618722 - 18618511
Alignment:
| Q |
4 |
aaagacgaattctcatagtagaagtttaaaggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgat |
103 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
18618722 |
aaagacgaattctcagagtagaagtttaagggattgcatgcaagcttgagattcaaagaccttgtggctgtccaatttcaagaggtcttaaagattggat |
18618623 |
T |
|
| Q |
104 |
cgtgtgtgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatacacttgtagacattttcatcatagcggaagaccgtgatagagg |
203 |
Q |
| |
|
| |||||||||||||||||||||| | ||||| || ||||||||| ||| ||| | ||||| ||||||||||||||| | ||| |||||||| ||| |
|
|
| T |
18618622 |
ttattctgattgcttagcatagaagatt-aggaatcaaaagaatctttgcaatcatatatttgtaaacattttcatcatagtgaaagcccgtgatatagg |
18618524 |
T |
|
| Q |
204 |
tgttttctatcac |
216 |
Q |
| |
|
||||||||||| |
|
|
| T |
18618523 |
cattttctatcac |
18618511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 31 - 182
Target Start/End: Complemental strand, 20309920 - 20309770
Alignment:
| Q |
31 |
aaaggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgatcgtgtgtgattgcttagcatagaagat |
130 |
Q |
| |
|
|||||||| |||| || ||||||||| ||||||| | ||| |||||||||||||||||||||||||||| |||| |||| |||||||||||||||| || |
|
|
| T |
20309920 |
aaaggatttcatgcaatcttgagatttgaagaccttatggttgtccaatttcaagaggtcttgaagattggatcttgtgccattgcttagcatagaaaat |
20309821 |
T |
|
| Q |
131 |
taatgaatcgaatgaatctttgtaattatacacttgtagacattttcatcat |
182 |
Q |
| |
|
| | |||||||| |||||||||||| ||||||||||| ||||||| ||||| |
|
|
| T |
20309820 |
t-aggaatcgaagtaatctttgtaatcatacacttgtaaacattttaatcat |
20309770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 189
Target Start/End: Original strand, 20572599 - 20572754
Alignment:
| Q |
34 |
ggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgatcgtgtgtgattgcttagcatagaagattaa |
133 |
Q |
| |
|
||||||||| |||||||| ||| ||||||| |||||||||| | ||||||||| |||||||||| |||| |||| ||| ||||| |||||| |||| |
|
|
| T |
20572599 |
ggattgcatacaagcttgaaatttgaagaccttgtggctgtctgacttcaagaggccttgaagattggatctagtgtaatttcttagaatagaatattat |
20572698 |
T |
|
| Q |
134 |
tgaatcgaatgaatctttgtaattatacacttgtagacattttcatcatagcggaa |
189 |
Q |
| |
|
||||| || |||||||||| |||||| |||| ||||||||||||||| |||| |
|
|
| T |
20572699 |
aatttcgaaggattctttgtaataatacacctgtaaacattttcatcatagtggaa |
20572754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 132
Target Start/End: Original strand, 2767592 - 2767688
Alignment:
| Q |
36 |
attgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgatcgtgtgtgattgcttagcatagaagatta |
132 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||||||| |||||||||| |||||||||| |||| |||| ||||| ||||||||||||||| |
|
|
| T |
2767592 |
attgcatgcaagcttgaaattcgaagaccttgtggctgttagatttcaagagagcttgaagattagatctagtgttattgcctagcatagaagatta |
2767688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 2758011 - 2758093
Alignment:
| Q |
78 |
atttcaagaggtcttgaagatttgatcgtgtgtgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatac |
161 |
Q |
| |
|
|||||||||| |||||||||| |||| |||||||||| |||||||||||||| | |||||||| ||||||||||||| |||| |
|
|
| T |
2758011 |
atttcaagagagcttgaagattggatctagtgtgattgcctagcatagaagatt-aggaatcgaaagaatctttgtaatcatac |
2758093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 45080238 - 45080304
Alignment:
| Q |
66 |
tgtggctgtccaatttcaagaggtcttgaagatttgatcgtgtgtgattgcttagcatagaagatta |
132 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| || | ||||||||||||||||||||| |||| |
|
|
| T |
45080238 |
tgtggctttccaatttcaagagatcttgaagattggacctagtgtgattgcttagcatagaaaatta |
45080304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 17262897 - 17262743
Alignment:
| Q |
13 |
ttctcatagtagaagtttaaaggattgcatggaagcttgagattcgaagaccatgtggct-gtccaatttcaagaggtcttgaagatttgatcgtgtgtg |
111 |
Q |
| |
|
|||||| |||||||| | |||| || |||| ||||||||| ||| |||||| ||||| | |||||||||||| || ||||||||| ||| | |||| |
|
|
| T |
17262897 |
ttctcagagtagaagatcgaaggttttcatgcaagcttgaggttcaaagaccctgtggattgtccaatttcaaaagaatttgaagattggattctttgtg |
17262798 |
T |
|
| Q |
112 |
--attgcttagcatagaagattaatgaatcgaatgaatctttgtaattatacactt |
165 |
Q |
| |
|
||| |||||||||||| |||| ||||||||| ||||||||||||| |||||||| |
|
|
| T |
17262797 |
cgatttcttagcatagaaaatta-tgaatcgaaggaatctttgtaatcatacactt |
17262743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 2762207 - 2762258
Alignment:
| Q |
36 |
attgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagag |
87 |
Q |
| |
|
|||||||| ||||||| ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
2762207 |
attgcatgctagcttgatattcgaagaccttgtggctgtccgatttcaagag |
2762258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 195
Target Start/End: Complemental strand, 12885 - 12722
Alignment:
| Q |
31 |
aaaggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgatcgtgtgtgattgcttagcatagaagat |
130 |
Q |
| |
|
||||||||||||| || ||||||||||||||| | |||||||||| || |||||||||||||||||||| |||| ||||||||| ||||| ||||||||| |
|
|
| T |
12885 |
aaaggattgcatgcaaacttgagattcgaagatcttgtggctgtctaaattcaagaggtcttgaagattggatcttgtgtgattacttagtatagaagat |
12786 |
T |
|
| Q |
131 |
taatgaatcgaatgaatctttgtaattatacacttgtagacattttcatcatagcggaagaccgt |
195 |
Q |
| |
|
| ||||||||| ||||||||||||| |||| |||||| ||||||||||| ||| ||||| |||| |
|
|
| T |
12785 |
t-gtgaatcgaaggaatctttgtaatcatacgcttgtaaacattttcatcgtagtggaagcccgt |
12722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 31 - 195
Target Start/End: Complemental strand, 19943 - 19780
Alignment:
| Q |
31 |
aaaggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgatcgtgtgtgattgcttagcatagaagat |
130 |
Q |
| |
|
||||||||||||| || |||||||||| |||| | |||||||||| || |||||||||||||||||||| |||| ||||||||| ||||| ||||||||| |
|
|
| T |
19943 |
aaaggattgcatgcaaacttgagattctaagatcttgtggctgtctaaattcaagaggtcttgaagattggatcttgtgtgattacttagtatagaagat |
19844 |
T |
|
| Q |
131 |
taatgaatcgaatgaatctttgtaattatacacttgtagacattttcatcatagcggaagaccgt |
195 |
Q |
| |
|
| ||||||||| ||||||||||||| |||| |||||| ||||||||||| ||| ||||| |||| |
|
|
| T |
19843 |
t-gtgaatcgaaggaatctttgtaatcatacgcttgtaaacattttcatcgtagtggaagcccgt |
19780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 184
Target Start/End: Original strand, 64123 - 64302
Alignment:
| Q |
4 |
aaagacgaattctcatagtagaagtttaaaggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgat |
103 |
Q |
| |
|
||||||||||||| | |||||||||| || || ||||||| |||||||||||||||||||| ||||||||||||| || |||||| ||||| |||||| | |
|
|
| T |
64123 |
aaagacgaattcttagagtagaagttcaacgggttgcatgcaagcttgagattcgaagaccttgtggctgtccaaatttaagaggccttgaggatttgtt |
64222 |
T |
|
| Q |
104 |
cgtgtgtgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatacacttgtagacattttcatcatag |
184 |
Q |
| |
|
| ||||||| | ||||| |||||||||| | || || || ||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
64223 |
cttgtgtgaattcttagtatagaagattga-gattcaaaggaatctttgtaatcatacacttgtaaacattttcatcatag |
64302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 184
Target Start/End: Complemental strand, 66244 - 66065
Alignment:
| Q |
4 |
aaagacgaattctcatagtagaagtttaaaggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgat |
103 |
Q |
| |
|
||||||||||||| | |||||||||| || || ||||||| |||||||||||||||||||| ||||||||||||| || |||||| ||||| |||||| | |
|
|
| T |
66244 |
aaagacgaattcttagagtagaagttcaacgggttgcatgcaagcttgagattcgaagaccttgtggctgtccaaatttaagaggccttgaggatttgtt |
66145 |
T |
|
| Q |
104 |
cgtgtgtgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatacacttgtagacattttcatcatag |
184 |
Q |
| |
|
| ||||||| | ||||| |||||||||| | || || || ||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
66144 |
cttgtgtgaattcttagtatagaagattga-gattcaaaggaatctttgtaatcatacacttgtaaacattttcatcatag |
66065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 22337238 - 22337446
Alignment:
| Q |
8 |
acgaattctcatagtagaagtttaaaggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgatcgtg |
107 |
Q |
| |
|
|||||||||| ||||| | || || ||||||||||||||||||||||||||||||| ||||||||| |||||||| |||| |||||||||| |||| | |
|
|
| T |
22337238 |
acgaattctcggagtagcaattcaagggattgcatggaagcttgagattcgaagaccttgtggctgttcaatttcatgaggacttgaagattggatcttt |
22337337 |
T |
|
| Q |
108 |
tgtgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatacacttgtagacattttcatcatagcggaagaccgtgatagaggtgtt |
207 |
Q |
| |
|
|| ||||||||||||| ||||| | ||||| || |||||||| |||| ||||||||||| |||||||||| | | |||||||||||||| || || |
|
|
| T |
22337338 |
agtaattgcttagcataaaagatgagggaatcaaaggaatctttataatcatacacttgtaaacattttcatgacaaaggaagaccgtgataaagacttt |
22337437 |
T |
|
| Q |
208 |
ttctatcac |
216 |
Q |
| |
|
||||||||| |
|
|
| T |
22337438 |
ttctatcac |
22337446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 22266966 - 22267174
Alignment:
| Q |
8 |
acgaattctcatagtagaagtttaaaggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgatcgtg |
107 |
Q |
| |
|
||||||||||| ||||| | || || ||||||||||||||||||||||||||||||| |||| |||| || |||||||||| |||||||||| |||| | |
|
|
| T |
22266966 |
acgaattctcagagtagcaattcaagggattgcatggaagcttgagattcgaagaccttgtgactgttcagtttcaagaggacttgaagattggatcttt |
22267065 |
T |
|
| Q |
108 |
tgtgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatacacttgtagacattttcatcatagcggaagaccgtgatagaggtgtt |
207 |
Q |
| |
|
|| |||||||| |||| ||||| | ||||| || |||||||| |||| ||||||||| | |||||||||| | | |||| |||||||||||| || |
|
|
| T |
22267066 |
agtaattgcttaacataaaagatgagggaatcaaaggaatctttataatcatacacttgaaaacattttcatgacaaaggaataccgtgatagagacttt |
22267165 |
T |
|
| Q |
208 |
ttctatcac |
216 |
Q |
| |
|
||||||||| |
|
|
| T |
22267166 |
ttctatcac |
22267174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 22724549 - 22724680
Alignment:
| Q |
72 |
tgtccaatttcaagaggtcttgaagatttgatcgtgtgtgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatacacttgtagac |
171 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| ||||||||| ||||||||| ||||||| |||||||| ||||||||||||| ||||||||||| || |
|
|
| T |
22724549 |
tgtccaatttcatgaggtcttgaagattggatcttgtgtgattccttagcatataagattagggaatcgaaggaatctttgtaatcatacacttgtaaac |
22724648 |
T |
|
| Q |
172 |
a-ttttcatcatagcggaagaccgtgatagag |
202 |
Q |
| |
|
| |||| |||| || ||||||||||||||||| |
|
|
| T |
22724649 |
attttttatcagagtggaagaccgtgatagag |
22724680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 195
Target Start/End: Complemental strand, 17795636 - 17795446
Alignment:
| Q |
4 |
aaagacgaattctcatagtagaagtttaaaggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgat |
103 |
Q |
| |
|
|||||||| |||||| ||| |||| | ||||||| ||||| ||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||| || || |
|
|
| T |
17795636 |
aaagacgatttctcaaagtggaagatcaaaggatcgcatgcaagctatagatttgaagaccttgtggttgtccgatttcaagaggtattgaaggttggac |
17795537 |
T |
|
| Q |
104 |
cgtgtgtgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatacacttgtagacattttcatcatagcggaagaccgt |
195 |
Q |
| |
|
| |||| ||||| ||||| ||||||| ||||||||| ||||||||||||| ||||||||||| ||||||||||||||| ||||| |||| |
|
|
| T |
17795536 |
ctagtgtagctgcttggcataaaagatta-tgaatcgaaggaatctttgtaatcatacacttgtaaacattttcatcatagtggaagcccgt |
17795446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 13256408 - 13256304
Alignment:
| Q |
20 |
agtagaagtttaaaggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgatcgtgtgtgattgctta |
119 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||||||||||||| ||||||| || |||||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
13256408 |
agtagaagttcaagggattgcacggaagcttgagattcgaagactctgtggct------ttccaagaggttttgaagattggatcttgtgtgattgctta |
13256315 |
T |
|
| Q |
120 |
gcatagaagat |
130 |
Q |
| |
|
||| |||||| |
|
|
| T |
13256314 |
acattgaagat |
13256304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 23143259 - 23143194
Alignment:
| Q |
34 |
ggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatt |
99 |
Q |
| |
|
||||||||||||| |||||| ||||||||| | |||| ||||||||||||||| |||||||||| |
|
|
| T |
23143259 |
ggattgcatggaaacttgagtttcgaagacttagaggctctccaatttcaagaggacttgaagatt |
23143194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 8835269 - 8835462
Alignment:
| Q |
6 |
agacgaattctcatagtagaagtttaaaggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgatcg |
105 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||||||| |||||| | | ||| || |||||||||| ||||||||||| |||| |
|
|
| T |
8835269 |
agacgaattctcgaagtagaagtttaaaa-attgcatggaagcttgagatttaaagaccttatagctttcaaatttcaagaactcttgaagattggatct |
8835367 |
T |
|
| Q |
106 |
tgtgtgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatacacttgtagacattttcatcatagcggaagaccgtgatagag |
202 |
Q |
| |
|
|||||||||||||| ||| || ||||| ||||| ||||||||||||||| ||||||||||| ||| ||||||||| | ||||||||||||||| |
|
|
| T |
8835368 |
tgtgtgattgcttatcatgaaatattaaggaatcaaatgaatctttgtaaccatacacttgtaaaca--ttcatcataatgaaagaccgtgatagag |
8835462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 4007067 - 4007163
Alignment:
| Q |
93 |
gaagatttgatcgtgtgtgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatacacttgtagacattttcatcatagcggaag |
190 |
Q |
| |
|
||||||| |||| |||||||||| |||||||||||||||| ||| ||| ||||||||||||| ||||||||||| ||||||||||||||| ||||| |
|
|
| T |
4007067 |
gaagattggatcttgtgtgattgtttagcatagaagattaga-aattgaaggaatctttgtaatcatacacttgtaaacattttcatcatagtggaag |
4007163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 4012459 - 4012555
Alignment:
| Q |
93 |
gaagatttgatcgtgtgtgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatacacttgtagacattttcatcatagcggaag |
190 |
Q |
| |
|
||||||| |||| |||||||||| |||||||||||||||| ||| ||| ||||||||||||| ||||||||||| ||||||||||||||| ||||| |
|
|
| T |
4012459 |
gaagattggatcttgtgtgattgtttagcatagaagattaga-aattgaaggaatctttgtaatcatacacttgtaaacattttcatcatagtggaag |
4012555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 188
Target Start/End: Complemental strand, 14616186 - 14616003
Alignment:
| Q |
4 |
aaagacgaattctcatagtagaagtttaaaggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgat |
103 |
Q |
| |
|
|||||||| ||||| |||||||| | ||||||||||||| || |||||||||| |||||| ||||||||| |||||||||| ||| |||||| ||| |
|
|
| T |
14616186 |
aaagacgatttctcggagtagaagatcaaaggattgcatgcaaacttgagattcaaagacctcgtggctgtctgatttcaagagagcttaaagattggat |
14616087 |
T |
|
| Q |
104 |
cgtgtgtgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatacacttgtagacattttcatcatagcgga |
188 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||| || || ||| ||||||||||||||| || ||||||| |||||| |||| |
|
|
| T |
14616086 |
atattgtgattgattaacatagaagatt-gggaatcaaaggagtctatgtaattatacacttataaacattttaatcatatcgga |
14616003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 14616500 - 14616345
Alignment:
| Q |
20 |
agtagaagtttaaaggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgatcgtgtgtgattgctta |
119 |
Q |
| |
|
|||||||| | ||||||||| ||| || |||||||||| |||||| |||||||||| |||||||||| ||| |||||| ||| |||||||| ||| |
|
|
| T |
14616500 |
agtagaagatcaaaggattgtatgcaaacttgagattcaaagaccttgtggctgtctgatttcaagagagcttaaagattagatatattgtgattgatta |
14616401 |
T |
|
| Q |
120 |
gcatagaagattaatgaatcgaatgaatctttgtaattatacacttgtagacatttt |
176 |
Q |
| |
|
||||||||||| ||||| || || |||||||||||||||||||||| ||||||| |
|
|
| T |
14616400 |
acatagaagattgg-gaatcaaaggagtctttgtaattatacacttgtaaacatttt |
14616345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 151
Target Start/End: Complemental strand, 7229971 - 7229851
Alignment:
| Q |
31 |
aaaggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgatcgtgt-gtgattgcttagcatagaaga |
129 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| | |||| | |||||||||||| |||||||| ||| | |||| ||| |||||||| |||||| | |
|
|
| T |
7229971 |
aaaggattgcatggaggcttgagtttcgaagacctagaggcttttcaatttcaagagaacttgaaga-ttgctagtgtcgtggttgcttaggatagaaaa |
7229873 |
T |
|
| Q |
130 |
ttaatgaatcgaatgaatcttt |
151 |
Q |
| |
|
||| | |||||| |||||||| |
|
|
| T |
7229872 |
ttagggtatcgaaggaatcttt |
7229851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 16030974 - 16031035
Alignment:
| Q |
106 |
tgtgtgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatacacttgta |
168 |
Q |
| |
|
||||||||| |||||||||||||||| | |||| || ||||||||||||| ||||||||||| |
|
|
| T |
16030974 |
tgtgtgatttcttagcatagaagatt-agaaatcaaaggaatctttgtaatcatacacttgta |
16031035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 213
Target Start/End: Original strand, 16177441 - 16177623
Alignment:
| Q |
34 |
ggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgatcgtgtgtgattgcttagcatagaagattaa |
133 |
Q |
| |
|
||||||||| |||||||||| || |||| |||| |||| ||||||| ||||||| |||| |||| | | |||||||||||||| || |||||||| |
|
|
| T |
16177441 |
ggattgcattgaagcttgagttttgaaggtcatgaggctctccaattacaagaggacttggggattagttgtagtgtgattgcttaggattgaagattag |
16177540 |
T |
|
| Q |
134 |
tgaatcgaatgaatc-tttgtaattatacacttgtagaca-ttttcatcatagcgg-aagaccgtgatagaggtgttttctat |
213 |
Q |
| |
|
||||||| ||||| |||||||| ||| ||||| || |||||||||||| || ||| | ||||||||||||||||||| |
|
|
| T |
16177541 |
agaatcgatggaatcttttgtaatcataacattgtatccatttttcatcatagtggaaagttcttgatagaggtgttttctat |
16177623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 183
Target Start/End: Complemental strand, 53109 - 52930
Alignment:
| Q |
3 |
aaaagacgaattctcatagtagaagtttaaaggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttga |
102 |
Q |
| |
|
||||||||| |||||| || ||||| | ||||||||||||| |||||| ||||||||||||| ||||| ||||||||||| |||||| |||||||| || |
|
|
| T |
53109 |
aaaagacgatttctcagagcagaagatcaaaggattgcatgcaagcttaagattcgaagaccttgtggttgtccaatttccagaggttgtgaagattgga |
53010 |
T |
|
| Q |
103 |
tcgtgtgtgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatacacttgtagacattttcatcata |
183 |
Q |
| |
|
| ||||||||| ||||||||| ||||||| | |||| | |||| ||| |||| ||||||||||| |||||||||||||| |
|
|
| T |
53009 |
tattgtgtgatttcttagcataaaagattagt-aatcaagggaatttttataatcatacacttgtaaacattttcatcata |
52930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 156
Target Start/End: Complemental strand, 23909866 - 23909745
Alignment:
| Q |
34 |
ggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatttgatcgtgtgtgattgcttagcatagaagattaa |
133 |
Q |
| |
|
|||||||||| ||||||||||||| |||| ||||||| |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||| | |
|
|
| T |
23909866 |
ggattgcatgcaagcttgagattcaaagatcatgtggttgtccaattttaagaggtcttgaagattgaatcttgtgtgattgcttagcatagaagattga |
23909767 |
T |
|
| Q |
134 |
tgaatcgaatgaatctttgtaat |
156 |
Q |
| |
|
||||| || ||||||||||||| |
|
|
| T |
23909766 |
-gaatccaaggaatctttgtaat |
23909745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 29634004 - 29633864
Alignment:
| Q |
18 |
atagtagaagtttaaaggattgcatggaagcttgagattcgaagaccatgtggct-gtccaatttcaagaggtcttgaagatttga--tcgtgtgtgatt |
114 |
Q |
| |
|
|||||||||| | |||||||||||| || ||| ||||||||||||| ||||| | ||||||||||||||| ||||||||| || | | ||||||| |
|
|
| T |
29634004 |
atagtagaagatcgaaggattgcatgcaatcttaagattcgaagaccttgtggatagtccaatttcaagagtatttgaagattggatttgttatgtgatt |
29633905 |
T |
|
| Q |
115 |
gcttagcatagaagattaatgaatcgaatgaatctttgtaat |
156 |
Q |
| |
|
|||||||||| || ||| ||||||||||||||||||||||| |
|
|
| T |
29633904 |
gcttagcataaaatatt-gtgaatcgaatgaatctttgtaat |
29633864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 266
Target Start/End: Original strand, 16884328 - 16884480
Alignment:
| Q |
116 |
cttagcatagaagattaatgaatcgaatgaatctttgtaattatacacttgtagacattttcatcatagcggaagaccgtgatagaggtgttttctatca |
215 |
Q |
| |
|
||||||||| ||||||| ||||||||| || ||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||| ||||||| ||| |
|
|
| T |
16884328 |
cttagcatataagattagggaatcgaataaaactttgtaattatacacttgtaaacattttcatcatagtggaagcccgtgatagaggcgttttctttca |
16884427 |
T |
|
| Q |
216 |
c--atagatgatgtactcataacgaggatg-aaagggtgaacctctacaaatct |
266 |
Q |
| |
|
| | ||||||||||| | ||||||||| | |||||| |||||| || |||||| |
|
|
| T |
16884428 |
caaagagatgatgtac-cctaacgaggacgaaaagggagaacctttataaatct |
16884480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 184
Target Start/End: Original strand, 18951852 - 18952032
Alignment:
| Q |
4 |
aaagacgaattctcatagtagaagtttaaaggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtctt-gaagatttga |
102 |
Q |
| |
|
||||| ||||||||| |||||||| |||||||||| | || || || ||||| |||| ||||||||||| ||||||||| ||| ||||||| || |
|
|
| T |
18951852 |
aaagatgaattctcagagtagaagcttaaaggatttcgtgcaaaattaagatttcaagatgttgtggctgtcccgattcaagaggacttagaagattaga |
18951951 |
T |
|
| Q |
103 |
tcgtgtgtgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatacacttgtagacattttcatcatag |
184 |
Q |
| |
|
|| ||||||||| ||||||||||| ||||| |||||||| |||| |||||||||||| |||||| ||||||||||||||| |
|
|
| T |
18951952 |
tcttgtgtgatttcttagcatagatgattag-gaatcgaaagaatttttgtaattatatgcttgtaaacattttcatcatag |
18952032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 14981501 - 14981566
Alignment:
| Q |
34 |
ggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatt |
99 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | |||| ||||||||||||||| |||||||||| |
|
|
| T |
14981501 |
ggattgcatggaagcttgagaatcgaagacctagaggctctccaatttcaagaggacttgaagatt |
14981566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 41581057 - 41580890
Alignment:
| Q |
13 |
ttctcatagtagaagtttaaaggattgcatggaagcttgagattcgaagaccatgtggct-gtccaatttcaagaggtcttgaagatttgatcgt--gtg |
109 |
Q |
| |
|
|||||| |||||||| || |||||||||||| |||| |||| ||| |||||| ||||| | || ||||||||| |||||||| ||||| | ||| |
|
|
| T |
41581057 |
ttctcagagtagaagattgaaggattgcatgaaagcatgaggttcaaagaccttgtggattgtttgatttcaagaaagcttgaagacttgattttttgtg |
41580958 |
T |
|
| Q |
110 |
tgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatacacttgtagacattttca |
178 |
Q |
| |
|
||||||||||||||| |||||| | |||||||| ||||||||| ||||||||| ||||| | ||||||| |
|
|
| T |
41580957 |
tgattgcttagcataaaagatt-aggaatcgaaggaatctttgcaattatacatttgtaaatattttca |
41580890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 17061318 - 17061369
Alignment:
| Q |
13 |
ttctcatagtagaagtttaaaggattgcatggaagcttgagattcgaagacc |
64 |
Q |
| |
|
||||||||||||||| | ||||||||||||| |||||||||||||||||||| |
|
|
| T |
17061318 |
ttctcatagtagaagatcaaaggattgcatgcaagcttgagattcgaagacc |
17061369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 49331573 - 49331485
Alignment:
| Q |
129 |
attaatgaatcgaatgaatctttgtaattatacacttgtagacattttca-tcatagcggaagaccgtgatagaggtgttttctatcac |
216 |
Q |
| |
|
||||||||||| || ||||| ||||||| | |||||||| |||||| | |||||| |||||||||||||| ||||||||| |||||| |
|
|
| T |
49331573 |
attaatgaatcaaaagaatccttgtaatcttgcacttgtaagcatttttaatcatagtggaagaccgtgataaaggtgttttatatcac |
49331485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 16729 - 16642
Alignment:
| Q |
74 |
tccaatttcaagaggtcttgaagatttgatcgtgtgtgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatac |
161 |
Q |
| |
|
|||||||| |||||| |||||||||| |||| |||||||||| |||||||| ||||||| | |||||||||||||||| ||| |||| |
|
|
| T |
16729 |
tccaatttaaagaggacttgaagattggatcttgtgtgattgattagcataaaagattaggggatcgaatgaatctttgcaatcatac |
16642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 225588 - 225653
Alignment:
| Q |
34 |
ggattgcatggaagcttgagattcgaagaccatgtggctgtccaatttcaagaggtcttgaagatt |
99 |
Q |
| |
|
||||||| ||||||||| || |||||||||| |||| ||||||||||||||| |||||||||| |
|
|
| T |
225588 |
ggattgcgtggaagctttagtttcgaagacctaaaggctctccaatttcaagaggacttgaagatt |
225653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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