View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_127 (Length: 284)
Name: NF8180A_low_127
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_127 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 44988463 - 44988186
Alignment:
| Q |
1 |
aaaaagccaaatctgaatccgcgctttgctttgaagaaatctgaagatcaagttctgagnnnnnnn-cggagattaggttaagttgttaaagagaagttg |
99 |
Q |
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| T |
44988463 |
aaaaagccaaatctgaatccgcgctttgctttgaagaaatctgaagatcaagttctgagaaaaaaaacggagattaggttaagttgttaaagagaaattg |
44988364 |
T |
|
| Q |
100 |
aaagggaaagagtgtgatgagaaagcatacaatgggttgggtcatgaccctttgaactttggtactcgccatggcagcaggtgagggtgtgcggacgatg |
199 |
Q |
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| T |
44988363 |
aaagggaaagagtgtgatgagaaagcatacaatgggttgggtcatgaccctttgaactttggtactcgccatggcagcaggtgagggtgtgcggacgatg |
44988264 |
T |
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| Q |
200 |
aaggtttggagagacgatgagagctaaaccctagaaattgaacgaaagaattactcagaagaactgacttagtattat |
277 |
Q |
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| T |
44988263 |
aaggtttggagagacgatgagagctaaaccctagaaattgagcgaaagaattactcagaagaactgacttagtattat |
44988186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 104 - 240
Target Start/End: Complemental strand, 30882013 - 30881877
Alignment:
| Q |
104 |
ggaaagagtgtgatgagaaagcatacaatgggttgggtcatgaccctttgaactttggtactcgccatggcagcaggtgagggtgtgcggacgatgaagg |
203 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||| ||||||| |||||| |
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| T |
30882013 |
ggaaagagtgtgttgagaaagcgtacaatgggttgggtcataaccctctgaactttggtgctcgccatggcagctggtgagggtgagcggacggtgaagg |
30881914 |
T |
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| Q |
204 |
tttggagagacgatgagagctaaaccctagaaattga |
240 |
Q |
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| T |
30881913 |
tttggagagacgatgagagctaaaccctaaaaattga |
30881877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 57
Target Start/End: Complemental strand, 30882116 - 30882087
Alignment:
| Q |
28 |
gctttgaagaaatctgaagatcaagttctg |
57 |
Q |
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| T |
30882116 |
gctttgaagaaatctgaagatcaagttctg |
30882087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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