View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8180A_low_128 (Length: 284)
Name: NF8180A_low_128
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_128 |
 | |
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| [»] chr1 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0073 (1 HSPs) |
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| [»] scaffold0738 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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| [»] scaffold0752 (1 HSPs) |
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| [»] scaffold0544 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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| [»] scaffold0185 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0207 (1 HSPs) |
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| [»] scaffold0547 (1 HSPs) |
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| [»] scaffold0211 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0269 (2 HSPs) |
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| [»] scaffold0132 (2 HSPs) |
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| [»] scaffold0040 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 284
Target Start/End: Complemental strand, 20880330 - 20880055
Alignment:
| Q |
9 |
agcatagaaccagcttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttgg |
108 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||| |||||| | |||||||||||||||| |||||||||||| |
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|
| T |
20880330 |
agcatagaaccagtttgtgatctagagaaggagcatcagtaccacctcctttctgaaagatacattctgaaacaatcttcttcagcagcctatgagttgg |
20880231 |
T |
|
| Q |
109 |
agacaagttagcagatttggcttttggatttccattgaatagaacttcattaatcttctcctcccatttgtttttgattgcatccagctgatactggcca |
208 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
20880230 |
agacaagtcagcagatttggcttttggatttccattgaatagaactccattaatcttctcctcccattggtttttgattgcatccacctgatactggcca |
20880131 |
T |
|
| Q |
209 |
tcaatcgagcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctga |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20880130 |
tcaatcgagcatctgcatgctttagcaatagtttccaccgtgatggtaatctccatacccatcactgttgatctga |
20880055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 273
Target Start/End: Original strand, 22646293 - 22646544
Alignment:
| Q |
22 |
cttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttggagacaagttagca |
121 |
Q |
| |
|
||||||||| ||||||||| ||||| |||| ||||| |||||||||||||||||| | | |||||||| |||| ||| ||| |||||||||| | | | |
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|
| T |
22646293 |
cttgtgatccagagaaggataatcagtacctcctcccttctgaaagatgcattctgataagatcttcttaagcatcctgtgaattggagacaaatctgaa |
22646392 |
T |
|
| Q |
122 |
gatttggcttttggatttccattgaatagaacttcattaatcttctcctcccatttgtttttgattgcatccagctgatactggccatcaatcgagcatc |
221 |
Q |
| |
|
||||| ||||| ||| | ||||| | ||| |||||||||| | |||||| | | |||| || ||||||| ||| || |||| | | ||||||| |
|
|
| T |
22646393 |
gattttgctttaacattacatttgaacaagactccattaatcttgttctcccactggcttttaatggcatccacttgaaacaagccagtatttgagcatc |
22646492 |
T |
|
| Q |
222 |
tgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcac |
273 |
Q |
| |
|
|||||||||||||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
22646493 |
tgcatgctttagcaattgtttctactgtgatggtaatctccatacccatcac |
22646544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 284
Target Start/End: Complemental strand, 22153613 - 22153338
Alignment:
| Q |
9 |
agcatagaaccagcttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttgg |
108 |
Q |
| |
|
|||| ||||||||||||||||| | |||||||| |||| ||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||| |
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|
| T |
22153613 |
agcacagaaccagcttgtgatccaaagaaggagcatcagtaccacctcctttctgaaagatgcattttgagacaatcttcttcaacaccctatgagttgg |
22153514 |
T |
|
| Q |
109 |
agacaagttagcagatttggcttttggatttccattgaatagaacttcattaatcttctcctcccatttgtttttgattgcatccagctgatactggcca |
208 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||| |||||||| || |
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|
| T |
22153513 |
agacaagtcagaagatttggcttttggatttccattgaatagaactccattaatcttctcctctcattggtttttgattgcatccacttgatactgacct |
22153414 |
T |
|
| Q |
209 |
tcaatcgagcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctga |
284 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22153413 |
tcatttgagcatctgcatgctttagcaatagtttccacagtgatggtaatctccatacccatcactgttgatctga |
22153338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 23786971 - 23787239
Alignment:
| Q |
14 |
agaaccagcttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttggagaca |
113 |
Q |
| |
|
||||||| ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| | || ||||||||||||| ||||||||||||||| | |
|
|
| T |
23786971 |
agaaccaacttgtaatccagagaaggagaatcagtaccacctcctttctgaaagatgcattctgaaacgatcttcttcagcatcctatgagttggagata |
23787070 |
T |
|
| Q |
114 |
agttagcagatttggcttttggatttccattgaatagaacttcattaatcttctcctcccatttgtttttgattgcatccagctgatactggccatcaat |
213 |
Q |
| |
|
|||||| ||| || |||||||||||||||||||| |||||| |||||||||||| |||||||| | |||||||||||||| | ||||||||||||| | |
|
|
| T |
23787071 |
agttagaagactttgcttttggatttccattgaacagaactccattaatcttcttctcccattggcctttgattgcatccacttaatactggccatcatt |
23787170 |
T |
|
| Q |
214 |
cgagcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatct |
282 |
Q |
| |
|
||||||||||||||| |||| || |||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23787171 |
tgagcatctgcatgctctagcgattatttccactgtgatggtaatttccatacccatcactgttgatct |
23787239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 14 - 284
Target Start/End: Original strand, 62058 - 62328
Alignment:
| Q |
14 |
agaaccagcttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttggagaca |
113 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| | || ||||||||||||| ||||||||||||||||| |
|
|
| T |
62058 |
agaaccagcttgtgatccagagaaggagaatcagtaccacctcctttctgaaagatgcattctgaaacgatcttcttcagcaacctatgagttggagaca |
62157 |
T |
|
| Q |
114 |
agttagcagatttggcttttggatttccattgaatagaacttcattaatcttctcctcccatttgtttttgattgcatccagctgatactggccatcaat |
213 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||| |||||| ||||||||||| |||||||| || ||| |||||||||| ||||| ||||| ||| | |
|
|
| T |
62158 |
agtcagcagctttggcttttggatttccattgaacagaactctattaatcttcttctcccattggtctttaattgcatccacttgatattggccttcatt |
62257 |
T |
|
| Q |
214 |
cgagcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctga |
284 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
62258 |
tgagcatctgcatgctctagcaattgtttccaccgtgatggtaatctccatacccatcactgttgatctga |
62328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0738 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: scaffold0738
Description:
Target: scaffold0738; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 14 - 284
Target Start/End: Complemental strand, 1320 - 1050
Alignment:
| Q |
14 |
agaaccagcttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttggagaca |
113 |
Q |
| |
|
||||||| ||||||||| | |||||||| |||| ||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1320 |
agaaccaacttgtgatccaaagaaggagcatcagtaccacctcctttctaaaagatgcattctgagacaatcttcttgagcaccctatgagttggagaca |
1221 |
T |
|
| Q |
114 |
agttagcagatttggcttttggatttccattgaatagaacttcattaatcttctcctcccatttgtttttgattgcatccagctgatactggccatcaat |
213 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||| |||||||| || ||| | |
|
|
| T |
1220 |
agtcagaagatttggcttttggatttccattgaatagaacttcattaatcttcttctcccattggtctttgattgcatccacttgatactgaccttcatt |
1121 |
T |
|
| Q |
214 |
cgagcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctga |
284 |
Q |
| |
|
| |||||| ||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1120 |
tgggcatctacattctttagcaatagtttctactgtgatggtaatctccatacccatcactgttgatctga |
1050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 21 - 282
Target Start/End: Complemental strand, 56026 - 55765
Alignment:
| Q |
21 |
gcttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttggagacaagttagc |
120 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| |||| ||| |
|
|
| T |
56026 |
gcttgtgatctagagaaggagaatgagtaccacctcctttatgaaagatgcattctgagacaatcttcttcagcaacctatgagttggagataagtcagc |
55927 |
T |
|
| Q |
121 |
agatttggcttttggatttccattgaatagaacttcattaatcttctcctcccatttgtttttgattgcatccagctgatactggccatcaatcgagcat |
220 |
Q |
| |
|
|||||||||||||| ||||| |||||| |||||| |||||||||||| | || ||| | |||||||||||| | |||||||||||||||||| |||||| |
|
|
| T |
55926 |
agatttggcttttgaatttctattgaacagaactccattaatcttcttccccgattggcctttgattgcatcgacctgatactggccatcaatggagcat |
55827 |
T |
|
| Q |
221 |
ctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatct |
282 |
Q |
| |
|
|||||||||||| ||||||||||| | |||||||||| ||||||||||||||||||||||| |
|
|
| T |
55826 |
ttgcatgctttagaaatagtttccaccatgatggtaatttccatacccatcactgttgatct |
55765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 18546886 - 18547152
Alignment:
| Q |
9 |
agcatagaaccagcttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttgg |
108 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
18546886 |
agcacagaaccagcttgtgatccagagaaggagaaccagtaccacctcctttctgaaagatgcattctgagacaatcttcttcagcaacctatgagttgg |
18546985 |
T |
|
| Q |
109 |
agacaagttagcagatttggcttttggatttccattgaatagaacttcattaatcttctcctcccatttgtttttgattgcatccagctgatactggcca |
208 |
Q |
| |
|
||| |||| || ||||||||||||||||||||| | |||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
18546986 |
agataagtcagtagatttggcttttggatttcc-------aaaactccattaatcttctcctcccattgtgctttgattgcatccacctgatactggcca |
18547078 |
T |
|
| Q |
209 |
tcaatcgagcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatct |
282 |
Q |
| |
|
||| | ||||||||||||||| ||||||| || |||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18547079 |
tcatttgagcatctgcatgctctagcaattgtatccaccgtgatgggaatctccatacccatcactgttgatct |
18547152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 17783056 - 17783303
Alignment:
| Q |
16 |
aaccagcttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttggagacaag |
115 |
Q |
| |
|
||||||||||||||| | |||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17783056 |
aaccagcttgtgatccaaagaaggagcatcagtaccacctcctttctgaaagatgcattctgagacaatcttcttcagcaccctatgagttggagacaag |
17783155 |
T |
|
| Q |
116 |
ttagcagatttggcttttggatttccattgaatagaacttcattaatcttctcctcccatttgtttttgattgcatccagctgatactggccatcaatcg |
215 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| || ||| | | |
|
|
| T |
17783156 |
tcagaagatttggcttttggatttccattgaatagaacttcagtaatcttcttctcccatt---------------------gatactgaccctcatttg |
17783234 |
T |
|
| Q |
216 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctga |
284 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||| || ||||||||||||||| |
|
|
| T |
17783235 |
ggcatctgcatgctttagcaatagtttctactgtgatggtaatctccatatccgtcactgttgatctga |
17783303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 273
Target Start/End: Complemental strand, 19458688 - 19458429
Alignment:
| Q |
14 |
agaaccagcttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttggagaca |
113 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| |||| ||||| |||||||| ||||||||| | | ||||||||| |||| ||| ||| ||||||||| |
|
|
| T |
19458688 |
agaaccaacttgtgatccagagaaggagaatcagtacctcctcccttctgaaaaatgcattctgataaaatcttcttgagcatcctgtgaattggagaca |
19458589 |
T |
|
| Q |
114 |
agttagcagatttggcttttggatttccattgaatagaacttcattaatcttctcctcccatttgtttttgattgcatccagctgatactggccatcaat |
213 |
Q |
| |
|
||| | |||||| ||||| |||||| ||||| | ||| |||||||||| | |||||| | | |||| || ||||||| ||| | ||||||| | |
|
|
| T |
19458588 |
agtctgaagattttgctttgacatttcctttgaacatgactccattaatctttttctcccactggcttttaatagcatccacttgaaataagccatcatt |
19458489 |
T |
|
| Q |
214 |
cgagcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcac |
273 |
Q |
| |
|
|||||| ||||||||||||| || ||||| | |||||||||||||||||||||||||| |
|
|
| T |
19458488 |
tgagcatttgcatgctttagcgattgtttctactgtgatggtaatctccatacccatcac |
19458429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 1654493 - 1654551
Alignment:
| Q |
215 |
gagcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcac |
273 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
1654493 |
gagcatctgcatgctttagcaattgtttctacagtgatggtaatctccatacccatcac |
1654551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 13526764 - 13527032
Alignment:
| Q |
14 |
agaaccagcttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttggagaca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | || ||||| ||||||||||| |||||||| | |||||||||| || ||||||||||||||||| |
|
|
| T |
13526764 |
agaaccagcttgtgatctagagaaggagaatcagttcctcctcccttctgaaagatacattctaaaaggatcttcttcaacatcctatgagttggagaca |
13526863 |
T |
|
| Q |
114 |
agttagcagatttggcttttggatttccattgaatagaacttcattaatcttctcctcccatttgtttttgattgcatccagctgatactggccatcaat |
213 |
Q |
| |
|
||| || |||||||| |||||||||||| ||||| |||||| |||||||||| | |||||||| || ||| || ||||||| ||| | |||| |||||| |
|
|
| T |
13526864 |
agtcagaagatttggattttggatttcctttgaacagaactccattaatctttttctcccattggtctttaatagcatccacttgaaattggcaatcaat |
13526963 |
T |
|
| Q |
214 |
cgagcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatct |
282 |
Q |
| |
|
|||||||||||||||| || |||| ||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13526964 |
cgagcatctgcatgctataacaattgtttccaccgtgatggtaatctccatacccatcactgctgatct |
13527032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 23481856 - 23481914
Alignment:
| Q |
215 |
gagcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcac |
273 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
23481856 |
gagcatctgcatgctttagcaattgtttctactgtgatggtaatctccatacccatcac |
23481914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0752 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0752
Description:
Target: scaffold0752; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 284
Target Start/End: Original strand, 5490 - 5760
Alignment:
| Q |
14 |
agaaccagcttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttggagaca |
113 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||| ||||| |||||||||||||||||| | | ||||||||||||| ||||||||||||||||| |
|
|
| T |
5490 |
agaaccagcttgtgatctaaagaaggagaatcagtacctcctcccttctgaaagatgcattctgaaaggatcttcttcagcatcctatgagttggagaca |
5589 |
T |
|
| Q |
114 |
agttagcagatttggcttttggatttccattgaatagaacttcattaatcttctcctcccatttgtttttgattgcatccagctgatactggccatcaat |
213 |
Q |
| |
|
||| || |||||| |||||||||||||||||||| ||||||||||||||||||| |||||||| ||| || ||| || ||||||||||||||| | |
|
|
| T |
5590 |
agtcagaagattttgcttttggatttccattgaacagaacttcattaatcttcttctcccattaacctttaatatcattcacttgatactggccatcatt |
5689 |
T |
|
| Q |
214 |
cgagcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctga |
284 |
Q |
| |
|
|||||||||||||| |||| || ||||||| ||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
5690 |
tgagcatctgcatgcgctagcgattgtttccactgtgatggtaatttccatacccatcattgttgatctga |
5760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0544 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0544
Description:
Target: scaffold0544; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 284
Target Start/End: Complemental strand, 6697 - 6427
Alignment:
| Q |
14 |
agaaccagcttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttggagaca |
113 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| ||||| || ||||||||||||||||| | ||||||||||||| ||||||||||||||||| |
|
|
| T |
6697 |
agaaccagcttgtgatccagagaaggagaatcagtacctcctcccttttgaaagatgcattctaaaaggatcttcttcagcatcctatgagttggagaca |
6598 |
T |
|
| Q |
114 |
agttagcagatttggcttttggatttccattgaatagaacttcattaatcttctcctcccatttgtttttgattgcatccagctgatactggccatcaat |
213 |
Q |
| |
|
||| | |||||| |||||||||||||| |||||||||||| |||||||||||| |||||||| | ||| || ||||||| ||| ||||||||||||| |
|
|
| T |
6597 |
agtcaaaagattttgcttttggatttcctttgaatagaactccattaatcttcttctcccattggcctttaatagcatccacttgaaactggccatcaat |
6498 |
T |
|
| Q |
214 |
cgagcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctga |
284 |
Q |
| |
|
|||||| |||||||| |||| || ||||||| ||||||||||| ||||||| |||||||| |||||||| |
|
|
| T |
6497 |
tgagcatttgcatgctctagcgattgtttccactgtgatggtaatttccatacacatcactgctgatctga |
6427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 284
Target Start/End: Complemental strand, 19309693 - 19309423
Alignment:
| Q |
14 |
agaaccagcttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttggagaca |
113 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| | ||| |||||||| ||||||||| | | ||||||||||||| ||||||||||||||||| |
|
|
| T |
19309693 |
agaaccagcttgtgatccagagaaggagaatcaatacctcatcccttctgaaaaatgcattctgataggatcttcttcagcatcctatgagttggagaca |
19309594 |
T |
|
| Q |
114 |
agttagcagatttggcttttggatttccattgaatagaacttcattaatcttctcctcccatttgtttttgattgcatccagctgatactggccatcaat |
213 |
Q |
| |
|
||| | |||||| |||||||||||||| |||| ||| | | |||||||||||| |||||||| | ||| || |||| | ||| ||||||||||| | |
|
|
| T |
19309593 |
agtcaaaagattttgcttttggatttcctttgattaggaatccattaatcttcttctcccattggcctttaataacatctacttgaaactggccatcatt |
19309494 |
T |
|
| Q |
214 |
cgagcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctga |
284 |
Q |
| |
|
|||||||| |||||| |||| || ||||||| ||||||||||| ||||||| |||||||| |||||||| |
|
|
| T |
19309493 |
tgagcatctacatgctctagcgattgtttccactgtgatggtaatttccatacacatcactgctgatctga |
19309423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 273
Target Start/End: Complemental strand, 24811411 - 24811160
Alignment:
| Q |
22 |
cttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttggagacaagttagca |
121 |
Q |
| |
|
||||||||| ||||||||| ||||| |||| ||||| |||||||||||||||||| | | |||||||| |||| ||| ||| |||||||||| | | |
|
|
| T |
24811411 |
cttgtgatccagagaaggataatcagtacctcctcccttctgaaagatgcattctgataagatcttcttaagcatcctgtgaattggagacaaatctgat |
24811312 |
T |
|
| Q |
122 |
gatttggcttttggatttccattgaatagaacttcattaatcttctcctcccatttgtttttgattgcatccagctgatactggccatcaatcgagcatc |
221 |
Q |
| |
|
||||| ||||| | ||||| ||||| | ||| |||||||||| | |||||| | | |||| || ||||||| || | || ||| | | ||||||| |
|
|
| T |
24811311 |
gattttgctttagcatttcttttgaacaagactccattaatcttgttctcccactggcttttaatagcatccacctaaaacatcccagtatttgagcatc |
24811212 |
T |
|
| Q |
222 |
tgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcac |
273 |
Q |
| |
|
|||||||||||||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
24811211 |
tgcatgctttagcaattgtttctactgtgatggtaatctccatacccatcac |
24811160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 274
Target Start/End: Complemental strand, 1492 - 1232
Alignment:
| Q |
14 |
agaaccagcttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttggagaca |
113 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| ||||| |||| ||| ||||||||| | |||||||||||||||| ||| ||| ||||||||| |
|
|
| T |
1492 |
agaaccagcttgtgatccagagaaggagaatcagtacctcctcccttctaaaaaatgcattctgatacaatcttcttcagcatcctgtgaattggagaca |
1393 |
T |
|
| Q |
114 |
agttagcagatttggcttttggatttccattgaatagaacttcattaatcttctcctcccatttgtttttgattgcatccagctgatactggccatcaat |
213 |
Q |
| |
|
||| | |||||| |||||| |||||| ||||||| ||| |||||||||||| |||||||| | ||| | ||||||| ||| | ||||||||| | |
|
|
| T |
1392 |
agtcacaagattttgcttttacatttcctttgaatatgactccattaatcttcttctcccattggcctttactagcatccacttgaaattggccatcatt |
1293 |
T |
|
| Q |
214 |
cgagcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcact |
274 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| ||||||| || ||||||||||||||| |
|
|
| T |
1292 |
tgagcatctgcatgctctagcaattgtttccactatgatggtgatttccatacccatcact |
1232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 50557 - 50299
Alignment:
| Q |
14 |
agaaccagcttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttggagaca |
113 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| || | ||||| |||||||| ||||||||| | || ||||| ||||||| ||| ||| ||||||||| |
|
|
| T |
50557 |
agaaccagattgtgatccagagaaggagaatcagtagctcctcccttctgaaaaatgcattctgatacgatcttattcagcatcctgtgaattggagaca |
50458 |
T |
|
| Q |
114 |
agttagcagatttggcttttggatttccattgaatagaacttcattaatcttctcctcccatttgtttttgattgcatccagctgatactggccatcaat |
213 |
Q |
| |
|
||| | |||||| |||||| |||||| |||||||| || |||||||||||| |||||||| | ||| || |||||| ||| ||||||||||| | |
|
|
| T |
50457 |
agtcacaagattttgcttttacatttcctttgaataggacaccattaatcttcttctcccattggcctttaataacatccacttgaaactggccatcatt |
50358 |
T |
|
| Q |
214 |
cgagcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatca |
272 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||||| |
|
|
| T |
50357 |
tgagcatctgcatgctctagcaattgtttccactgtgatggtaatttccatacccatca |
50299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0185 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 12684 - 12943
Alignment:
| Q |
14 |
agaaccagcttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttggagaca |
113 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| ||||| |||||||| ||||||||| | | ||||||||| |||| ||| ||| ||||||||| |
|
|
| T |
12684 |
agaaccagcttgtgatccagagaaggagaatcagtacctcctcccttctgaaaaatgcattctgataaaatcttcttgagcatcctgtgaattggagaca |
12783 |
T |
|
| Q |
114 |
agttagcagatttggcttttggatttccattgaatagaacttcattaatcttctcctcccatttgtttttgattgcatccagctgatactggccatcaat |
213 |
Q |
| |
|
||| | |||||| ||||| |||||| |||||||| ||| |||||||||||| |||||||| | ||| || ||||| | ||| | ||||||| | |
|
|
| T |
12784 |
agtcaaaagattttgctttaacatttcctttgaataggactccattaatcttcttctcccattggcctttaatagcatctacttgaaataagccatcatt |
12883 |
T |
|
| Q |
214 |
cgagcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcac |
273 |
Q |
| |
|
|||||||||||||||||||| || ||||| | |||||||||||||||||||||||||| |
|
|
| T |
12884 |
tgagcatctgcatgctttagcgattgtttcgactgtgatggtaatctccatacccatcac |
12943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 273
Target Start/End: Complemental strand, 13181478 - 13181221
Alignment:
| Q |
16 |
aaccagcttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttggagacaag |
115 |
Q |
| |
|
||||| ||||||||| | ||||||||||||| |||| ||||| |||||||||||||||||| | | ||||||||| |||| ||| ||| ||||||||||| |
|
|
| T |
13181478 |
aaccaacttgtgatccaaagaaggagaatcagtacctcctcccttctgaaagatgcattctgataaaatcttcttgagcatcctgtgaattggagacaag |
13181379 |
T |
|
| Q |
116 |
ttagcagatttggcttttggatttccattgaatagaacttcattaatcttctcctcccatttgtttttgattgcatccagctgatactggccatcaatcg |
215 |
Q |
| |
|
| | |||||| ||||| |||||| |||||||| ||| |||||||||| | |||||| | | |||| || ||||||| ||| || ||||||| | | |
|
|
| T |
13181378 |
tctgaagattttgctttgacatttcctttgaataggactccattaatctttttctcccactagcttttaatagcatccacttgaaacaagccatcatttg |
13181279 |
T |
|
| Q |
216 |
agcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcac |
273 |
Q |
| |
|
|||||||||||||||||||||| |||| | |||||||||||||||||||||||||| |
|
|
| T |
13181278 |
agcatctgcatgctttagcaattatttctactgtgatggtaatctccatacccatcac |
13181221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 108445 - 108704
Alignment:
| Q |
14 |
agaaccagcttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttggagaca |
113 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| |||| ||||| |||||||| ||||||||| | | || ||||| |||| ||| ||| |||| |||| |
|
|
| T |
108445 |
agaaccaacttgtgatccagagaaggagaatcagtacctcctcccttctgaaaaatgcattctgataagattttcttgagcatcctgtgaattggggaca |
108544 |
T |
|
| Q |
114 |
agttagcagatttggcttttggatttccattgaatagaacttcattaatcttctcctcccatttgtttttgattgcatccagctgatactggccatcaat |
213 |
Q |
| |
|
||| | |||||| ||||| |||||| ||||| || ||| |||||||||| | |||||| | | |||| || ||||||| ||| || |||||||| | |
|
|
| T |
108545 |
agtctgaagattttgctttgacatttcctttgaacaggactccattaatctttttctcccactggcttttaatagcatccacttgaaacaggccatcatt |
108644 |
T |
|
| Q |
214 |
cgagcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcac |
273 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
108645 |
tgagcatctgcatgctttagcaattgtttctactgtgatggtaatctccatacccatcac |
108704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 273
Target Start/End: Complemental strand, 3355 - 3104
Alignment:
| Q |
22 |
cttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttggagacaagttagca |
121 |
Q |
| |
|
||||||||| ||||||||| ||||| |||| ||||| |||||||||||||||||| | | |||||||| |||| ||| ||| |||||||||| | | |
|
|
| T |
3355 |
cttgtgatccagagaaggataatcagtacctcctcccttctgaaagatgcattctgataagatcttcttaagcatcctgtgaattggagacaaatctgat |
3256 |
T |
|
| Q |
122 |
gatttggcttttggatttccattgaatagaacttcattaatcttctcctcccatttgtttttgattgcatccagctgatactggccatcaatcgagcatc |
221 |
Q |
| |
|
||||| ||||| | ||||| ||||| | ||| |||||||||| | |||||| | | |||| || ||||||| || | || ||| | | ||||||| |
|
|
| T |
3255 |
gattttgctttagcatttcttttgaacaagactccattaatcttgttctcccactggcttttaatagcatccacctaaaacatcccagtatttgagcatc |
3156 |
T |
|
| Q |
222 |
tgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcac |
273 |
Q |
| |
|
|||||||||||||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
3155 |
tgcatgctttagcaattgtttctactgtgatggtaatctccatacccatcac |
3104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0207 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0207
Description:
Target: scaffold0207; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 273
Target Start/End: Original strand, 23997 - 24248
Alignment:
| Q |
22 |
cttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttggagacaagttagca |
121 |
Q |
| |
|
||||||||| ||||||||| ||||| |||| ||||| |||||||| ||||||||| | | |||||||| || ||||| ||| ||| ||||| | | |
|
|
| T |
23997 |
cttgtgatccagagaaggataatcagtacctcctcccttctgaaaaatgcattctgataatatcttcttaagtaccctgtgatttgaagacatttctgat |
24096 |
T |
|
| Q |
122 |
gatttggcttttggatttccattgaatagaacttcattaatcttctcctcccatttgtttttgattgcatccagctgatactggccatcaatcgagcatc |
221 |
Q |
| |
|
||||| ||||| | ||||| |||||| | ||| |||||||||| |||||||| | |||| | ||||||| |||| || |||| | | ||||||| |
|
|
| T |
24097 |
gattttgctttagcatttctattgaacaagactccattaatcttgctctcccattggcttttaacagcatccacctgaaacaagccagaattggagcatc |
24196 |
T |
|
| Q |
222 |
tgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcac |
273 |
Q |
| |
|
|||||||||||||||| ||||| | ||||| ||||||||||||||||||| |
|
|
| T |
24197 |
tgcatgctttagcaattgtttctacaatgatgataatctccatacccatcac |
24248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0547 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0547
Description:
Target: scaffold0547; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 4207 - 4359
Alignment:
| Q |
22 |
cttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttggagacaagttagca |
121 |
Q |
| |
|
||||||||| | ||||||| ||||| |||| ||||| ||||| || ||||||||| | | |||||||||||| | ||||||| ||||||||| | | | |
|
|
| T |
4207 |
cttgtgatccaaagaaggataatcagtacctcctcccttctggaaaatgcattctgaaagaatcttcttcagaagcctatgaactggagacaactctgaa |
4306 |
T |
|
| Q |
122 |
gatttggcttttggatttccattgaatagaacttcattaatcttctcctccca |
174 |
Q |
| |
|
||||| || || | |||||| | |||||| ||| |||||||||| |||||||| |
|
|
| T |
4307 |
gattttgccttagcatttccttggaataggactccattaatcttgtcctccca |
4359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 16816052 - 16815900
Alignment:
| Q |
22 |
cttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttggagacaagttagca |
121 |
Q |
| |
|
||||||||| | ||||||| ||||| |||| ||||| ||||| || ||||||||| | | |||||||||||| | ||||||| ||||||||| | | | |
|
|
| T |
16816052 |
cttgtgatccaaagaaggataatcagtacctcctcccttctggaaaatgcattctgaaagaatcttcttcagaagcctatgaactggagacaactctgaa |
16815953 |
T |
|
| Q |
122 |
gatttggcttttggatttccattgaatagaacttcattaatcttctcctccca |
174 |
Q |
| |
|
||||| || || | |||||| | |||||| ||| |||||||||| |||||||| |
|
|
| T |
16815952 |
gattttgccttagcatttccttggaataggactccattaatcttgtcctccca |
16815900 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 13134860 - 13134952
Alignment:
| Q |
22 |
cttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatgagttggagacaa |
114 |
Q |
| |
|
||||||||| ||||||||||||||| |||| ||||| |||||||||||||||| | | | |||||||| |||| ||| ||| |||||||||| |
|
|
| T |
13134860 |
cttgtgatccagagaaggagaatcagtacctcctcccttctgaaagatgcattatgataagatcttcttaagcatcctgtgaattggagacaa |
13134952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 13142891 - 13142949
Alignment:
| Q |
215 |
gagcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcac |
273 |
Q |
| |
|
||||||||||| ||||||||||| ||||| | |||||| ||||||||||||||||||| |
|
|
| T |
13142891 |
gagcatctgcaagctttagcaattgtttctactgtgatgataatctccatacccatcac |
13142949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 15837009 - 15837060
Alignment:
| Q |
222 |
tgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcac |
273 |
Q |
| |
|
|||||||||||||||| ||||| | ||||||||||| |||||||||||||| |
|
|
| T |
15837009 |
tgcatgctttagcaattgtttctacagtgatggtaatttccatacccatcac |
15837060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 274
Target Start/End: Complemental strand, 6998 - 6939
Alignment:
| Q |
215 |
gagcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcact |
274 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| |
|
|
| T |
6998 |
gagcatctgcatgctttagcaattgtttcttcagtgatggtgatctccatacccatcact |
6939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 162085 - 162027
Alignment:
| Q |
215 |
gagcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcac |
273 |
Q |
| |
|
||||||||||| ||||||||||| ||||| | |||||| ||||||||||||||||||| |
|
|
| T |
162085 |
gagcatctgcaagctttagcaattgtttctactgtgatgataatctccatacccatcac |
162027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0269 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0269
Description:
Target: scaffold0269; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 10726 - 10795
Alignment:
| Q |
215 |
gagcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcactgttgatctga |
284 |
Q |
| |
|
||||||||||||||| |||| || |||||| |||||||| ||||||||||||||||||| ||| |||| |
|
|
| T |
10726 |
gagcatctgcatgctctagctattgtttcctgagtgatggtgatctccatacccatcactgctgacctga |
10795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0269; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 10534 - 10583
Alignment:
| Q |
23 |
ttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgca |
72 |
Q |
| |
|
|||||||||||||||||| ||||| |||| ||||| |||||||| ||||| |
|
|
| T |
10534 |
ttgtgatctagagaaggataatcagtacctcctcccttctgaaaaatgca |
10583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0132 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0132
Description:
Target: scaffold0132; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 21631 - 21573
Alignment:
| Q |
215 |
gagcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcac |
273 |
Q |
| |
|
||||||| ||||||||||||||| ||||| | |||||||||| |||||||||||||| |
|
|
| T |
21631 |
gagcatccgcatgctttagcaattgtttctacagtgatggtaaggtccatacccatcac |
21573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0132; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 34832 - 34774
Alignment:
| Q |
215 |
gagcatctgcatgctttagcaatagtttccatcgtgatggtaatctccatacccatcac |
273 |
Q |
| |
|
||||||| ||||||||||||||| ||||| | |||||||||| |||||||||||||| |
|
|
| T |
34832 |
gagcatccgcatgctttagcaattgtttctacagtgatggtaaggtccatacccatcac |
34774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 73130 - 73211
Alignment:
| Q |
22 |
cttgtgatctagagaaggagaatcaataccacctcctttctgaaagatgcattctaagacaatcttcttcagcaccctatga |
103 |
Q |
| |
|
||||||||| | ||||||| ||||||||| ||||| ||||| || ||||||||||| | ||| |||||||| | ||||||| |
|
|
| T |
73130 |
cttgtgatccaaagaaggactatcaatacctcctcccttctggaaaatgcattctaaaagaattttcttcagaagcctatga |
73211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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