View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8180A_low_132 (Length: 281)
Name: NF8180A_low_132
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_132 |
 | |
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| [»] scaffold0009 (1 HSPs) |
| |
|
| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 99641 - 99911
Alignment:
| Q |
11 |
cagagaccatgtttatgctggcatgtccagtggtgtgattgtgcaagggtctcctcaatggattagtttggaagaagtcttaagagaggttcatggagga |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
99641 |
cagataccatgtttatgctggcatgtccagtggtgtgattgtgcaagggtttccccaatggattagtttggaagaagtcttgagagaggttcatggagga |
99740 |
T |
|
| Q |
111 |
cgagtttatcgccataggtgtgatgttgagggtggcaggagctgattttatgttatggtgctgtaactgttggataatttttcttttaattttgatgtta |
210 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
99741 |
cgagtttaccgccataggtttgatgttgagggtggcaggggctgattttatgttatggtgttgtaaccgttggataatttttcttttaattttaatgtta |
99840 |
T |
|
| Q |
211 |
tgtcttaacatttggtttgtaacctttggataatttgtgtttttaatttaatgttaaaaattgtgttgtga |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
99841 |
tgtcttaacatttggtttgtaacctttggataatttgtgtttttaatttaatgttgaaaattgtgttgtga |
99911 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 262
Target Start/End: Complemental strand, 27575776 - 27575513
Alignment:
| Q |
11 |
cagagaccatgtttatgctggcatgtccagtggtgtgattgtgcaagggtctcctcaatggattagtttggaagaagtcttaagagaggttcatggagga |
110 |
Q |
| |
|
|||| ||||||| |||||| ||||||||||||||||||| |||||||||| || |||| || ||||||||||||||| |||||||||||||||||| |
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|
| T |
27575776 |
cagaaaccatgtgtatgctctgatgtccagtggtgtgattgcgcaagggtcttctgaatgagttcatttggaagaagtcttgagagaggttcatggagga |
27575677 |
T |
|
| Q |
111 |
cgagtttatcgccataggtgtgatgttgagggtggcaggagc------------tgattttatgttatggtgctgtaactgttggataatttttctttta |
198 |
Q |
| |
|
|||||||| || | |||| | |||||||||||||||| || ||||||||| |||||||| |||||| |||||| ||||| |||| |
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|
| T |
27575676 |
cgagtttaccgtcgtaggcttattgttgagggtggcaggggcaagggaagggattgattttattttatggtgttgtaaccaatggatactttttattttc |
27575577 |
T |
|
| Q |
199 |
attttgatgttatgtcttaacatttggtttgtaacctttggataatttgtgtttttaatttaat |
262 |
Q |
| |
|
||||| ||||||||| | |||| ||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
27575576 |
attttaatgttatgtttgaacaattggtttgtaacctttggataatttgtatttttaatctaat |
27575513 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 25966716 - 25966984
Alignment:
| Q |
11 |
cagagaccatgtttatgctggcatgtccagtggtgtgattgtgcaagggtctcctcaatggattagtttggaagaagtcttaagagaggttcatggagga |
110 |
Q |
| |
|
|||||||||||| |||| || ||||||||||||||||||| |||||||||| || |||| || |||||||||| |||| |||||| ||||||||||| |
|
|
| T |
25966716 |
cagagaccatgtgtatgttgtgatgtccagtggtgtgattgcgcaagggtcttctgaatgagttcatttggaagaactcttgagagagattcatggagga |
25966815 |
T |
|
| Q |
111 |
cgagtttatcgccataggtgtgatgttgagggtggc---------------aggagctgattttatgttatggtgctgtaactgttggataatttttctt |
195 |
Q |
| |
|
|||||||| || | || | ||||| |||||||| | | ||||||||||| |||||||| |||||||| |||||| |||| || |
|
|
| T |
25966816 |
cgagtttactgctgtgggcttaatgttaagggtggccagggctgcaagggcatgggctgattttattttatggtgttgtaactgatggataccttttgtt |
25966915 |
T |
|
| Q |
196 |
ttaattttgatgttatgtcttaacatttggtttgtaacctttggataatttgtgtttttaatttaatgtt |
265 |
Q |
| |
|
|| ||||| | ||||||| | |||| ||||||||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
25966916 |
ttcattttaa-gttatgtttgaacaattggtttgtaacctttggataatttgtatttttaatctaatgtt |
25966984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 32463093 - 32462954
Alignment:
| Q |
11 |
cagagaccatgtttatgctggcatgtccagtggtgtgattgtgcaagggtctcctcaatgga-ttagtttggaagaagtcttaagagaggttcatggagg |
109 |
Q |
| |
|
|||||||||||| |||| || ||||||||||||||||||| |||| |||||| | |||||| || ||||||||||||| | |||||| |||||||||| |
|
|
| T |
32463093 |
cagagaccatgtctatggtgtgatgtccagtggtgtgattgcgcaaaggtctcatgaatggagttcatttggaagaagtcctgagagagtttcatggagg |
32462994 |
T |
|
| Q |
110 |
acgagtttatcgccataggtgtgatgttgagggtggcagg |
149 |
Q |
| |
|
|| |||||| |||| |||| ||||||||||||||| |||| |
|
|
| T |
32462993 |
acaagtttaccgccgtaggcgtgatgttgagggtgacagg |
32462954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 149
Target Start/End: Original strand, 15344121 - 15344258
Alignment:
| Q |
12 |
agagaccatgtttatgctggcatgtccagtggtgtgattgtgcaagggtctcctcaatggattagtttggaagaagtcttaagagaggttcatggaggac |
111 |
Q |
| |
|
||||| ||||| |||| || |||||||||||||||| | | ||||| ||||| |||| || || ||||| | |||| |||||||||||||||| | |
|
|
| T |
15344121 |
agagatcatgtctatgttgtcatgtccagtggtgtggtgccgtaagggcctcctgcatgggttcattcggaaggaatcttgggagaggttcatggagggc |
15344220 |
T |
|
| Q |
112 |
gagtttatcgccataggtgtgatgttgagggtggcagg |
149 |
Q |
| |
|
|||||||||| | |||| |||||||| |||||| |||| |
|
|
| T |
15344221 |
gagtttatcgtcgtaggcgtgatgtttagggtgacagg |
15344258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 32462876 - 32462823
Alignment:
| Q |
228 |
tgtaacctttggataatttgtgtttttaatttaa-tgttaaaaattgtgttgtg |
280 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| | || |||||||||||||| |
|
|
| T |
32462876 |
tgtaacatttggataatttgtgtttttaatttaatttttgaaaattgtgttgtg |
32462823 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 265
Target Start/End: Original strand, 17796 - 17909
Alignment:
| Q |
152 |
ctgattttatgttatggtgctgtaactgttggataatttttcttttaattttgatgttatgtcttaacatttggtttgtaacctttggataatttgtgtt |
251 |
Q |
| |
|
||||||||||||||||||| |||||| || | |||||||| |||||||||| || ||||| | || | ||||||||||||||||||||||||||| || |
|
|
| T |
17796 |
ctgattttatgttatggtgttgtaaccgtggtataattttaattttaattttaattttatgcttaaataattggtttgtaacctttggataatttgtatt |
17895 |
T |
|
| Q |
252 |
tttaatttaatgtt |
265 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
17896 |
tttaatttaatgtt |
17909 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 94 - 280
Target Start/End: Original strand, 5729613 - 5729799
Alignment:
| Q |
94 |
gagaggttcatggaggacgagtttatcgccataggtgtgatgttgagggtggcaggagctgattttat--gttatggtgctgtaactgttggataatttt |
191 |
Q |
| |
|
||||||| |||||||| | |||||||| | |||| |||||||| ||||| ||||| | ||||||||| ||||||||| |||||| ||||||||||||| |
|
|
| T |
5729613 |
gagaggtccatggagggagggtttatcgtcgtaggcgtgatgttcagggtagcaggggttgattttatatgttatggtgttgtaaccgttggataatttt |
5729712 |
T |
|
| Q |
192 |
tcttttaattttgatgttatgtcttaacatttggtttgtaacctttggataatttgtgtttttaatttaatg-ttaaaaattgtgttgtg |
280 |
Q |
| |
|
| |||| ||||| ||||||||| || | || | |||||||| || ||||||||| | |||||||| ||||| || |||||||||||||| |
|
|
| T |
5729713 |
tattttgattttaatgttatgt-ttgaaatat--tttgtaacattgggataatttttatttttaatctaatgtttgaaaattgtgttgtg |
5729799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 36562480 - 36562565
Alignment:
| Q |
196 |
ttaattttga-tgttatgtcttaacatttggtttgtaacctttggataatttgtgtttttaatttaatg-ttaaaaattgtgttgt |
279 |
Q |
| |
|
|||||||||| | |||||||| |||| ||||||||||||||||||||||||| ||||| ||||||||| || ||||||||||||| |
|
|
| T |
36562480 |
ttaattttgaattttatgtctgaacacttggtttgtaacctttggataattttagttttaaatttaatgtttgaaaattgtgttgt |
36562565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 265
Target Start/End: Complemental strand, 33364484 - 33364315
Alignment:
| Q |
94 |
gagaggttcatggaggacgagtttatcgccataggtgtgatgttgagggtggcaggagct-gattttatgttatggtgctgtaactgttggataattttt |
192 |
Q |
| |
|
||||||||||| |||| | |||||||| | ||| ||| ||||| ||||||||| | | ||||||||||||||||| ||||| ||||||||| | || |
|
|
| T |
33364484 |
gagaggttcatagagggtgggtttatcgtcgtagacgtgttgttgggggtggcagaggttagattttatgttatggtgttgtaatcgttggataaatgtt |
33364385 |
T |
|
| Q |
193 |
cttttaattttgatgttatgtcttaacatttggtttgtaacctttggataatttgtgtttttaatttaatgtt |
265 |
Q |
| |
|
||| ||||| ||||||||| | ||| ||||||||||| || ||||||||| | |||||||| ||||||| |
|
|
| T |
33364384 |
actttgattttaatgttatgtatgaac---tggtttgtaactttgggataatttttatttttaatctaatgtt |
33364315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 32421233 - 32421282
Alignment:
| Q |
100 |
ttcatggaggacgagtttatcgccataggtgtgatgttgagggtggcagg |
149 |
Q |
| |
|
||||||||||||||||||| ||| |||| |||||||||||||||||||| |
|
|
| T |
32421233 |
ttcatggaggacgagtttactgccgtaggcgtgatgttgagggtggcagg |
32421282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 265
Target Start/End: Original strand, 32421353 - 32421410
Alignment:
| Q |
208 |
ttatgtcttaacatttggtttgtaacctttggataatttgtgtttttaatttaatgtt |
265 |
Q |
| |
|
|||||| | |||| ||||||||||||||||||||| ||| | |||||||| ||||||| |
|
|
| T |
32421353 |
ttatgtttgaacaattggtttgtaacctttggatactttttatttttaatctaatgtt |
32421410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 14912775 - 14912848
Alignment:
| Q |
208 |
ttatgtcttaacatttggtttgtaacctttggataatttgtgtttttaatttaatg-ttaaaaattgtgttgtg |
280 |
Q |
| |
|
|||||| || |||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
14912775 |
ttatgtattgacatttggtttgtaacatttggataatttgtgtttttaatttaatgtttgaaaattgtgttgtg |
14912848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 14912592 - 14912703
Alignment:
| Q |
34 |
tgtccagtggtgtgattgtgcaagggtctcctcaatggattagtttggaagaagtcttaagagaggttcatggaggacgagtttatcgccataggtgtga |
133 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||| || |||||||| |||||| ||||||| |||||||| ||||||| |||| |||| |||| |
|
|
| T |
14912592 |
tgtccaatggtgtgattgtgcaagggtctcctgaatgagttcatttggaaggagtcttggtagaggtttatggaggatgagtttaccgccgtaggcgtga |
14912691 |
T |
|
| Q |
134 |
tgttgagggtgg |
145 |
Q |
| |
|
||||| |||||| |
|
|
| T |
14912692 |
tgttgtgggtgg |
14912703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 43134908 - 43134846
Alignment:
| Q |
218 |
acatttggtttgtaacctttggataatttgtgtttttaatttaatg-ttaaaaattgtgttgt |
279 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||| | |||||||||||||||| |
|
|
| T |
43134908 |
acatttggtttgtaacctttggataatttctgttttaaatttaaggtttaaaaattgtgttgt |
43134846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 246
Target Start/End: Complemental strand, 17998274 - 17998236
Alignment:
| Q |
208 |
ttatgtcttaacatttggtttgtaacctttggataattt |
246 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
17998274 |
ttatgtttgaacatttggtttgtaacctttggataattt |
17998236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 208 - 280
Target Start/End: Complemental strand, 26630040 - 26629967
Alignment:
| Q |
208 |
ttatgtcttaacatttggtttgtaacctttggataatttgtgtttttaatttaatg-ttaaaaattgtgttgtg |
280 |
Q |
| |
|
|||||| | |||||||||||| |||| |||||||||||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
26630040 |
ttatgtttgaacatttggtttctaacatttggataatttctgtttttaatttaatgtttgaaaattgtgttgtg |
26629967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 280
Target Start/End: Complemental strand, 26614670 - 26614597
Alignment:
| Q |
208 |
ttatgtcttaacatttggtttgtaacctttggataatttgtgtttttaatttaat-gttaaaaattgtgttgtg |
280 |
Q |
| |
|
|||||| | |||||||||||| || | |||||||||||| | ||||||||||||| ||||||||||||||||| |
|
|
| T |
26614670 |
ttatgtttgaacatttggtttatagcatttggataatttctatttttaatttaatatttaaaaattgtgttgtg |
26614597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 28770343 - 28770415
Alignment:
| Q |
208 |
ttatgtcttaacatttggtttgtaacctttggataatttgtgtttttaatttaatg-ttaaaaattgtgttgt |
279 |
Q |
| |
|
|||||| | |||||| ||||||||||||||||||||||| ||||| |||||| || || ||||||||||||| |
|
|
| T |
28770343 |
ttatgtttgaacattgggtttgtaacctttggataatttcagttttaaatttattgtttgaaaattgtgttgt |
28770415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 54454170 - 54454110
Alignment:
| Q |
11 |
cagagaccatgtttatgctggcatgtccagtggtgtgattgtgcaagggtctcctcaatgg |
71 |
Q |
| |
|
|||||||||||| | || || ||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
54454170 |
cagagaccatgtctgtgttgtgatgtccattggtgtgattgcgcaagggtctcctcaatgg |
54454110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 8108420 - 8108356
Alignment:
| Q |
217 |
aacatttggtttgtaacctttggataatttgtgtttttaatttaatg-ttaaaaattgtgttgtg |
280 |
Q |
| |
|
||||||||||| |||| ||| | || |||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
8108420 |
aacatttggttcgtaatcttggcatgatttttgtttttaatttaatgtttgaaaattgtgttgtg |
8108356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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