View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_136 (Length: 278)
Name: NF8180A_low_136
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_136 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 44853553 - 44853287
Alignment:
| Q |
1 |
agacgagatcgaatatggaccaaaatgatttgttataaacgcgttaaaataaaatcgacaggcctgctaaatccaatatacgcaacccggcccattgtaa |
100 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44853553 |
agacgagatcgaatatggaccaaaataattttttataaacgcgttaaaataaaatcgacaggcctgctaaatccaatatacgcaacccgacccattgtaa |
44853454 |
T |
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| Q |
101 |
actacatgattcgattctaaccctagaaaccacggcaccaacggcgcggataaatatcattttcctttttatcttttaccgnnnnnnntaatgataaaat |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
44853453 |
actacatgactcgattctaaccctagaaaccacggcaccaacggcgcg-----------ttttcctttttatcttttacccaaaaaaataatgataaaat |
44853365 |
T |
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| Q |
201 |
accattttctttttcatcttttaccacaaaaatcgtactataggacaaaatattaaatcagatttgaacaaaatttga |
278 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44853364 |
accattttctttttcatcttttaccataaaaatcgtactataggacaaaatattaaatcagatttgaacaaaatttga |
44853287 |
T |
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