View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_137 (Length: 278)
Name: NF8180A_low_137
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_137 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 51516495 - 51516226
Alignment:
| Q |
1 |
tcacaaatatataaagcagaagctacagaggaaattaaaaaacctattaggcctgagcaatgatcgaacgacttgggcagctttcagcctctgtttcata |
100 |
Q |
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| T |
51516495 |
tcacaaatatataaagcagaagctacagaggaaattaaaaaacctattaggcctgagcaatgatcgaacaacttgggcagctttcagcctctgtttcaca |
51516396 |
T |
|
| Q |
101 |
tcaagataactggaaggttcatcaaacatgtatatctcagcattttggatggcaacaaccgcaatggcaaacctttggagctcaccccctgaaagatcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51516395 |
tcaagataactggaaggttcatcaaacatgtatatctcagcattttggatggcaacaaccgcaatggcaaacctttggagctcaccccctgaaagatcac |
51516296 |
T |
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| Q |
201 |
caacattacgatctataacttgattaagctcaagatcagcacaaagcctttccttcatgtctctctcatt |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51516295 |
caacattacgatctataacttgattaagctcaagatcagcacaaagcctttccttcatgtctctctcatt |
51516226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 8001184 - 8000925
Alignment:
| Q |
12 |
taaagcagaagctacagaggaaattaaa-aaacctattaggcctgagcaatgatcgaacgacttgggcagctttcagcctctgtttcatatcaagataac |
110 |
Q |
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| T |
8001184 |
taaagcagaaactacaaaggaaaggaaacaaacctattaggcctgagcaatgaccgaacaacttgcgcagctttcagcctctgtttcacatcaagataac |
8001085 |
T |
|
| Q |
111 |
tggaaggttcatcaaacatgtatatctcagcattttggatggcaacaaccgcaatggcaaacctttggagctcaccccctgaaagatcaccaacattacg |
210 |
Q |
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| T |
8001084 |
tggaaggttcatcaaacatgtatatctcagcattttggatggcaacaactgcaatggcaaacctttggagctcaccccctgaaagatcaccaacattacg |
8000985 |
T |
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| Q |
211 |
atctataacttgattaagctcaagatcagcacaaagcctttccttcatgtctctctcatt |
270 |
Q |
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||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| |
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| T |
8000984 |
atctataacttgattaagctcgagatcagcacaaagtttttccttcatatctctctcatt |
8000925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 7907163 - 7907424
Alignment:
| Q |
12 |
taaagcagaagctacagaggaaattaaa-aaacctattaggcctgagcaatgatcgaacgacttgggcagctttcagcctctgtttcatatcaagataac |
110 |
Q |
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|||||||||| ||||| |||||| ||| |||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||| ||||||||||| |
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| T |
7907163 |
taaagcagaaactacaaaggaaaggaaacaaacctattaggcctgagcaatgaccgaacaacttgcgcagctttcagcctctgtttcacatcaagataac |
7907262 |
T |
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| Q |
111 |
tggaaggttcatcaaacatgtatatctcagcattttggatggcaacaaccgcaatggcaaacctttggagctcaccccctgaaagatcaccaacattacg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7907263 |
tggaaggttcatcaaacatgtatatctcagcattttggatggcaacaactgcaatggcaaacctttggagctcaccccctgaaagatcaccaacattacg |
7907362 |
T |
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| Q |
211 |
atctataacttgattaagctcaagatcag--cacaaagcctttccttcatgtctctctcatt |
270 |
Q |
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|||||||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||| |
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| T |
7907363 |
atctataacttgattaagttcaagatcagcacacaaagcttttccttcatatctctctcatt |
7907424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 6 - 270
Target Start/End: Original strand, 1302559 - 1302825
Alignment:
| Q |
6 |
aatatataaagcagaagctacagagg--aaattaaaaaacctattaggcctgagcaatgatcgaacgacttgggcagctttcagcctctgtttcatatca |
103 |
Q |
| |
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||||| |||||||||||||||||| |||| || | |||||||| |||| |||||||| || || |||||||||||||||||||||||||||| |||| |
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| T |
1302559 |
aatatttaaagcagaagctacagatataaaataaacagacctattatgccttagcaatgaccggacaacttgggcagctttcagcctctgtttcacatca |
1302658 |
T |
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| Q |
104 |
agataactggaaggttcatcaaacatgtatatctcagcattttggatggcaacaaccgcaatggcaaacctttggagctcaccccctgaaagatcaccaa |
203 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||| | | ||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
1302659 |
agataactagaaggttcatcaaacatgtatatctccgcattttggatggcaatacctgcaatggcaaacctttgaagctcaccccctgaaagatcaacaa |
1302758 |
T |
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| Q |
204 |
cattacgatctataacttgattaagctcaagatcagcacaaagcctttccttcatgtctctctcatt |
270 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| |
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| T |
1302759 |
cattacgatctataacttgattaagctcaagagcagcacaaagctcttccttcatatctctctcatt |
1302825 |
T |
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