View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_139 (Length: 277)

Name: NF8180A_low_139
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_139
NF8180A_low_139
[»] chr1 (13 HSPs)
chr1 (6-145)||(1350376-1350515)
chr1 (162-274)||(47586798-47586910)
chr1 (155-238)||(49968797-49968879)
chr1 (155-229)||(41061742-41061814)
chr1 (155-239)||(47107251-47107334)
chr1 (162-229)||(12173683-12173749)
chr1 (162-232)||(10722517-10722585)
chr1 (155-193)||(41181683-41181721)
chr1 (155-232)||(10711698-10711773)
chr1 (155-238)||(9903853-9903934)
chr1 (162-212)||(25592088-25592136)
chr1 (155-229)||(40292681-40292753)
chr1 (155-212)||(1395048-1395103)
[»] chr3 (12 HSPs)
chr3 (155-277)||(24124391-24124513)
chr3 (155-232)||(26845341-26845416)
chr3 (155-212)||(19221599-19221655)
chr3 (155-229)||(32233676-32233749)
chr3 (162-229)||(49500930-49500996)
chr3 (155-238)||(25341922-25342004)
chr3 (162-229)||(43122275-43122341)
chr3 (162-229)||(46664955-46665021)
chr3 (155-190)||(47536740-47536775)
chr3 (155-193)||(32093544-32093582)
chr3 (162-212)||(50543697-50543746)
chr3 (155-232)||(11639437-11639512)
[»] chr7 (10 HSPs)
chr7 (155-277)||(4076744-4076865)
chr7 (155-274)||(18654385-18654503)
chr7 (155-238)||(20037588-20037670)
chr7 (155-238)||(20047719-20047801)
chr7 (155-220)||(23397268-23397331)
chr7 (162-230)||(7459266-7459333)
chr7 (170-239)||(28060062-28060130)
chr7 (155-232)||(46177725-46177800)
chr7 (162-209)||(10282439-10282485)
chr7 (155-212)||(9036298-9036353)
[»] chr4 (8 HSPs)
chr4 (155-277)||(18935136-18935258)
chr4 (155-212)||(1844872-1844928)
chr4 (155-212)||(12881299-12881355)
chr4 (155-230)||(10563904-10563978)
chr4 (155-238)||(19164457-19164538)
chr4 (155-232)||(53779514-53779591)
chr4 (155-229)||(18107153-18107225)
chr4 (162-212)||(31863744-31863792)
[»] chr5 (8 HSPs)
chr5 (155-274)||(40089807-40089926)
chr5 (155-232)||(20209314-20209389)
chr5 (155-238)||(6048707-6048789)
chr5 (155-232)||(4922705-4922780)
chr5 (155-211)||(8891966-8892021)
chr5 (155-193)||(7001394-7001432)
chr5 (155-193)||(34875069-34875107)
chr5 (155-212)||(4416314-4416369)
[»] chr2 (7 HSPs)
chr2 (155-274)||(18704346-18704464)
chr2 (155-238)||(9393007-9393089)
chr2 (155-232)||(24314018-24314093)
chr2 (155-229)||(3000345-3000417)
chr2 (194-232)||(30273507-30273545)
chr2 (155-212)||(7075583-7075638)
chr2 (155-232)||(22295924-22296000)
[»] chr8 (6 HSPs)
chr8 (155-239)||(10267576-10267659)
chr8 (162-232)||(26030969-26031037)
chr8 (155-230)||(45256421-45256495)
chr8 (162-238)||(17658310-17658385)
chr8 (155-193)||(29470828-29470866)
chr8 (155-190)||(31082242-31082277)
[»] chr6 (5 HSPs)
chr6 (155-229)||(26526001-26526073)
chr6 (155-232)||(17079785-17079860)
chr6 (155-232)||(17874395-17874471)
chr6 (155-232)||(6831525-6831600)
chr6 (159-212)||(21251971-21252022)
[»] scaffold0179 (1 HSPs)
scaffold0179 (155-229)||(6997-7070)
[»] scaffold0308 (1 HSPs)
scaffold0308 (155-211)||(11550-11605)
[»] scaffold0007 (1 HSPs)
scaffold0007 (162-212)||(181607-181655)
[»] scaffold0227 (1 HSPs)
scaffold0227 (162-210)||(8404-8450)


Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 6 - 145
Target Start/End: Original strand, 1350376 - 1350515
Alignment:
Q  6 catagaggactgatacaaagctttaatccagtgacattttatcaacattatttcttaagcgcaattcgtgtgataaaatattaaagatgtaaaagctagt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1350376 catagaggactgatacaaagctttaatccagtgacattttatcaacattgtttcttaagcgcaattcgtatgataaaatattaaagatgtaaaagctagt 1350475  T
Q  106 ttcatattagttaaattagttagcctaattggctatataa 145  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1350476 ttcatattagttaaattagttagcctaattggctatataa 1350515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 162 - 274
Target Start/End: Original strand, 47586798 - 47586910
Alignment:
Q  162 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaacaaacagaaagacaagcatccaaaa 261  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||| ||||||||||||||||||  ||   | |||||| ||| ||    
T  47586798 aaaaatggaatatatattaaccaccaaaagcaaactcctctaacacaaggtgtgccaaatgaattactttaaaaacaatgagtcggtcaagcacccataa 47586897  T
Q  262 acaaaccattaag 274  Q
    |||||||||||||    
T  47586898 acaaaccattaag 47586910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 49968797 - 49968879
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaaca 238  Q
    |||||| ||||||||||| ||||||||||||||||||| |||| |||||||||||||| ||||||| ||  ||||||| |||||    
T  49968797 aacaatcaaaaatggaatttatattaaccaccaaaagc-aacttctctagcacaaggtgtgctaaaagagctactttacaaaca 49968879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 41061814 - 41061742
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 229  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||| ||||||||||||| ||||||| ||||||||    
T  41061814 aacaatcaaaaatggaatatatattaac-accaaaagcaa-ctcttctagcacaaggtgtgctaaaagaattact 41061742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 239
Target Start/End: Complemental strand, 47107334 - 47107251
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaacaa 239  Q
    |||||| ||||||| ||||||||||||| ||||||||| ||||||||||| ||||||| ||| ||| ||| |||| || ||||||    
T  47107334 aacaatcaaaaatgaaatatatattaactaccaaaagc-aactcctctagtacaaggtgtgccaaaagaactactctacaaacaa 47107251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 12173683 - 12173749
Alignment:
Q  162 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 229  Q
    |||||||||||||||||||||||| |||| | ||||||||||||||||| | ||| ||| ||||||||    
T  12173683 aaaaatggaatatatattaaccacaaaaaac-aactcctctagcacaagatgtgccaaaagaattact 12173749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 10722517 - 10722585
Alignment:
Q  162 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 232  Q
    ||||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||| ||| ||| |||||||    
T  10722517 aaaaatggaat-tatattaaccaccaaaagc-aactcttctagcacaaggtgtgccaaaagaactacttta 10722585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 41181683 - 41181721
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagca 193  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  41181683 aacaataaaaaatgggatatatattaaccaccaaaagca 41181721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 10711773 - 10711698
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 232  Q
    |||||| ||||||| ||| ||||||||||||||||||| ||||| ||||||||||||| ||| ||| ||| |||||||    
T  10711773 aacaatcaaaaatgaaat-tatattaaccaccaaaagc-aactcttctagcacaaggtgtgccaaaagaactacttta 10711698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 9903934 - 9903853
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaaca 238  Q
    |||||| ||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||| ||||||| ||| |||| || |||||    
T  9903934 aacaatcaaaaatggaat-tatgttaaccaccaaaagc-aactcttctagtacaaggtgtgctaaaagaactactctacaaaca 9903853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 25592136 - 25592088
Alignment:
Q  162 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 212  Q
    ||||||||||| ||||||||||||||||||| ||||| |||||||||||||    
T  25592136 aaaaatggaat-tatattaaccaccaaaagc-aactcttctagcacaaggt 25592088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 40292753 - 40292681
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 229  Q
    |||||| ||||||||||| |||||||| |||||||||| ||||| ||||||||||||| ||| ||| ||| ||||    
T  40292753 aacaatcaaaaatggaat-tatattaatcaccaaaagc-aactcttctagcacaaggtgtgccaaaagaactact 40292681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 1395103 - 1395048
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 212  Q
    |||||| ||||||||||| ||||||||||||||||| | ||||| |||||||||||||    
T  1395103 aacaatcaaaaatggaat-tatattaaccaccaaaaac-aactcttctagcacaaggt 1395048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 155 - 277
Target Start/End: Complemental strand, 24124513 - 24124391
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaacaaacagaaagacaagca 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||  ||||||||||||||||||||||||||  | |||||||    
T  24124513 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaagtgtgtcaaaggaattactttaaaaacaaacagtcaaacaagca 24124414  T
Q  255 tccaaaaacaaaccattaagtga 277  Q
    |||||||||||||||||||||||    
T  24124413 tccaaaaacaaaccattaagtga 24124391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 26845341 - 26845416
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 232  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  26845341 aacaatcaaaaatggaatatatattaac-accaaaagcaa-ctcctctagcacaaggtgtgctaaaagaattacttta 26845416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 19221599 - 19221655
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 212  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  19221599 aacaataaaaaatggaatatatattaacaaccaaaagc-aactcctctagcacaaggt 19221655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 32233749 - 32233676
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 229  Q
    |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||| ||| ||| ||| ||||    
T  32233749 aacaataaaaaatgaaatttatattaaccaccaaaagc-aactcctctagcacaaggtgtgccaaaagaactact 32233676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 49500996 - 49500930
Alignment:
Q  162 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 229  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||| | ||| ||| ||||||||    
T  49500996 aaaaatggaatatatattaaccacaaaaagc-aactcctctagcacaagatgtgccaaaagaattact 49500930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 25342004 - 25341922
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaaca 238  Q
    |||||| ||||||| ||||||||||||||||||||||| |||  |||||||| ||||| ||| ||| ||| ||||||| |||||    
T  25342004 aacaatcaaaaatgaaatatatattaaccaccaaaagc-aaccactctagcataaggtgtgccaaaagaactactttacaaaca 25341922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 43122341 - 43122275
Alignment:
Q  162 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 229  Q
    |||||||||||||||||||||||| |||||| ||||||||||||| ||| | ||| ||| ||||||||    
T  43122341 aaaaatggaatatatattaaccacaaaaagc-aactcctctagcataagatgtgccaaaagaattact 43122275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 46664955 - 46665021
Alignment:
Q  162 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 229  Q
    |||||| ||||||||||||||||| |||||  ||||||||||||||||| | ||| ||| ||||||||    
T  46664955 aaaaatagaatatatattaaccacaaaaag-taactcctctagcacaagatgtgccaaaagaattact 46665021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 47536740 - 47536775
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaa 190  Q
    |||||||||||||||||| |||||||||||||||||    
T  47536740 aacaataaaaaatggaatttatattaaccaccaaaa 47536775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 32093582 - 32093544
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagca 193  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  32093582 aacaatcaaaaatgggatatatattaaccaccaaaagca 32093544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 50543697 - 50543746
Alignment:
Q  162 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 212  Q
    |||||||||||||||||||| || ||||||| ||||||||||||| |||||    
T  50543697 aaaaatggaatatatattaatcatcaaaagc-aactcctctagcataaggt 50543746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 11639437 - 11639512
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 232  Q
    |||||| ||||||||||| ||||||||||||||||| | ||||| ||| ||||||||| ||| ||| ||| |||||||    
T  11639437 aacaatcaaaaatggaat-tatattaaccaccaaaatc-aactcttcttgcacaaggtgtgccaaaagaactacttta 11639512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 155 - 277
Target Start/End: Original strand, 4076744 - 4076865
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaacaaacagaaagacaagca 254  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||  |||||||||    
T  4076744 aacaataaaaaatggaatatataataatcaccaaaagcaaactcctctagcacaaggtgtgccaaaagaattactttaaaaacaaagagtcagacaagca 4076843  T
Q  255 tccaaaaacaaaccattaagtga 277  Q
    ||| |||||||||||||||||||    
T  4076844 tcc-aaaacaaaccattaagtga 4076865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 274
Target Start/End: Complemental strand, 18654503 - 18654385
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaacaaacagaaagacaagca 254  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||| ||| ||| ||||||| ||||| | ||  | |||| ||    
T  18654503 aacaataaaaaatggaatataaattaaccaccaaaagc-aactcctctagcacaaggtgtgccaaaagaactactttacaaacacagagtcatacaaaca 18654405  T
Q  255 tccaaaaacaaaccattaag 274  Q
     |||||| ||||||||||||    
T  18654404 accaaaaccaaaccattaag 18654385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 20037670 - 20037588
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaaca 238  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| ||| ||| ||||||| |||||    
T  20037670 aacaatcaaaaatggaatatatattaaccaccaaaagc-aactcctctagcataaggtgtgccaaaagaactactttacaaaca 20037588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 20047801 - 20047719
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaaca 238  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||| ||| || |||| |||||    
T  20047801 aacaataaaaaatggaatatatattaaccaccaaaagc-aactcctctagtacaaggtgtgccaaaagaactattttacaaaca 20047719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 23397331 - 23397268
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaa 220  Q
    |||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||    
T  23397331 aacaatcaaaaatggaatatatattaac-accaaaag-aaactcctctagcacaaggtgtgctaaa 23397268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 7459333 - 7459266
Alignment:
Q  162 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactt 230  Q
    |||||||||||||||||||| |||||||||| |||||| |||||||||||| ||| ||| |||||||||    
T  7459333 aaaaatggaatatatattaaacaccaaaagc-aactcccctagcacaaggtgtgccaaaagaattactt 7459266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 28060062 - 28060130
Alignment:
Q  170 aatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaacaa 239  Q
    |||||||||||| |||||||||||| ||||||||||| ||||| ||  ||| || |||||||||||||||    
T  28060062 aatatatattaaacaccaaaagcaa-ctcctctagcataaggtgtgtcaaatgagttactttaaaaacaa 28060130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 46177725 - 46177800
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 232  Q
    |||||| ||||||||||||||||||| | ||||||| ||| ||||||||| | ||||| ||||||| |||||||||||    
T  46177725 aacaatcaaaaatggaatatatattagc-accaaaaacaa-ctcctctagtataaggtgtgctaaaagaattacttta 46177800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 10282485 - 10282439
Alignment:
Q  162 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaa 209  Q
    |||||||||||||||||||||||| |||| | ||||||||||||||||    
T  10282485 aaaaatggaatatatattaaccacaaaaaac-aactcctctagcacaa 10282439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 9036298 - 9036353
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 212  Q
    |||||| ||||||  |||||||||||||||||||||  |||||||||||||| |||||    
T  9036298 aacaatcaaaaataaaatatatattaaccaccaaaa--aaactcctctagcataaggt 9036353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 155 - 277
Target Start/End: Original strand, 18935136 - 18935258
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaacaaacagaaagacaagca 254  Q
    |||||| ||||||| |||||||||||||| ||||||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||  ||||||| |    
T  18935136 aacaattaaaaatgaaatatatattaaccgccaaaagcaaactccactagcacaaggtgtgccaaatgaattactttaaaaacaaacagtcagacaagta 18935235  T
Q  255 tccaaaaacaaaccattaagtga 277  Q
    |||||||||||||||||||||||    
T  18935236 tccaaaaacaaaccattaagtga 18935258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 1844928 - 1844872
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 212  Q
    |||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||    
T  1844928 aacaataaaaaatggaatttatattaaccatcaaaaac-aactcctctagcacaaggt 1844872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 12881355 - 12881299
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 212  Q
    |||||| || |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  12881355 aacaatcaacaatggaatttatattaaccaccaaaagc-aactcctctagcacaaggt 12881299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 10563978 - 10563904
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactt 230  Q
    |||||| |||||||||||||||||||| |||||||||| |||||| |||||| ||||| ||| | | |||||||||    
T  10563978 aacaatcaaaaatggaatatatattaaacaccaaaagc-aactcccctagcataaggtgtgccagaagaattactt 10563904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 19164457 - 19164538
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaaca 238  Q
    |||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||| ||| ||| |||| || |||||    
T  19164457 aacaatcaaaaatggaat-tatattaaccaccaaaagc-aactcttctagcacaaggtgtgccaaaagaactactctacaaaca 19164538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 53779514 - 53779591
Alignment:
Q  155 aacaataaaaaatggaatatatatt-aaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 232  Q
    |||||||||||||| |||||||||| || |||||||||| |||||  |||||||||||| ||| ||| |||||||||||    
T  53779514 aacaataaaaaatgaaatatatattaaaacaccaaaagc-aactctcctagcacaaggtgtgccaaaagaattacttta 53779591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 18107225 - 18107153
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 229  Q
    |||||||||||||||||| |||||||| |||||||||| ||||| ||| ||||||||| ||| ||| ||| ||||    
T  18107225 aacaataaaaaatggaat-tatattaatcaccaaaagc-aactcttctggcacaaggtgtgccaaaagaactact 18107153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 31863744 - 31863792
Alignment:
Q  162 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 212  Q
    ||||||||||| ||||||||||||||||||| ||||| |||||||||||||    
T  31863744 aaaaatggaat-tatattaaccaccaaaagc-aactcttctagcacaaggt 31863792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 155 - 274
Target Start/End: Original strand, 40089807 - 40089926
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaacaaacagaaagacaagca 254  Q
    |||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||||| ||| ||||||||| ||||||||||| | ||  |||||||||    
T  40089807 aacaatcaaaaatgtaatatatattaaccaccaaaagcgaacccctctagcacaaggtgtgccaaaggaattgctttaaaaacataaagttagacaagca 40089906  T
Q  255 tccaaaaacaaaccattaag 274  Q
     ||| |||||| ||||||||    
T  40089907 cccataaacaatccattaag 40089926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 20209389 - 20209314
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 232  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  20209389 aacaatcaaaaatggaatatatattaac-accaaaagcaa-ctcctctagcacaaggtgtgctaaaagaattacttta 20209314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 6048707 - 6048789
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaaca 238  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| ||| ||| |||| || |||||    
T  6048707 aacaataaaaaatggaatatatattaaccaccaaaagc-aactcctctagcataaggtgtgccaaaagaactactctacaaaca 6048789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 4922705 - 4922780
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 232  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||| |||||||||||    
T  4922705 aacaatcaaaaatggaatatatattaac-accaaaagcaa-ctcctctagcataaggtgtgctaaaagaattacttta 4922780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 8891966 - 8892021
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaagg 211  Q
    ||||||||||||||| |||||||||||||||||||||| | ||||| ||||||||||    
T  8891966 aacaataaaaaatgggatatatattaaccaccaaaagc-agctcctatagcacaagg 8892021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 7001432 - 7001394
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagca 193  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  7001432 aacaataaaaaatgggatatatattaaccaccaaaagca 7001394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 34875107 - 34875069
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagca 193  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  34875107 aacaatcaaaaatggaatttatattaaccaccaaaagca 34875069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 4416369 - 4416314
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 212  Q
    |||||||||||||||||| ||||| || |||||||||| ||||| |||||||||||||    
T  4416369 aacaataaaaaatggaat-tatataaatcaccaaaagc-aactcttctagcacaaggt 4416314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 274
Target Start/End: Complemental strand, 18704464 - 18704346
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaacaaacagaaagacaagca 254  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| | ||| ||| ||||||||  ||| ||||| ||  |||||||||    
T  18704464 aacaataaaaaatggaatatatattaaccatcaaaagc-aactcgtctagcacaagatgtgccaaaagaattactgcaaatacaaagagtcagacaagca 18704366  T
Q  255 tccaaaaacaaaccattaag 274  Q
     |||||||||||||||||||    
T  18704365 accaaaaacaaaccattaag 18704346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 9393007 - 9393089
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaaca 238  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||| ||||||| |||||    
T  9393007 aacaataaaaaatgaaatatatattaaccaccaaaagc-aactcctctagcacaaggtgtgccaaaagaaatactttacaaaca 9393089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 24314093 - 24314018
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 232  Q
    |||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  24314093 aacattaaaaaatggaatatatattaac-accaaaagcaa-ctcctctagcacaaggtgtgctaaacgaattacttta 24314018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 3000417 - 3000345
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 229  Q
    |||||||||||||||||| |||||||| |||||||||| ||||| ||| ||||||||| ||| ||| ||| ||||    
T  3000417 aacaataaaaaatggaat-tatattaatcaccaaaagc-aactcttctggcacaaggtgtgccaaaagaactact 3000345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 30273507 - 30273545
Alignment:
Q  194 aactcctctagcacaaggtatgctaaaggaattacttta 232  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  30273507 aactcctctagcacaaggtgtgctaaaagaattacttta 30273545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 7075583 - 7075638
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 212  Q
    |||||||||||||||||| |||||||| || ||||||| ||||| |||||||||||||    
T  7075583 aacaataaaaaatggaat-tatattaatcatcaaaagc-aactcttctagcacaaggt 7075638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 22296000 - 22295924
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 232  Q
    |||||| ||||||| |||||||||||||||  |||||| || ||||||| |||||||| ||| ||| ||| |||||||    
T  22296000 aacaatcaaaaatgaaatatatattaaccattaaaagc-aattcctctaacacaaggtgtgccaaaagaactacttta 22295924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 10267576 - 10267659
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaacaa 239  Q
    ||||||||||||||||||||||| ||| ||||||||  || ||||||||||||||||| ||| ||||||||||||||||||||||    
T  10267576 aacaataaaaaatggaatatataataatcaccaaaaataa-ctcctctagcacaaggtgtgccaaaggaattactttaaaaacaa 10267659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 26030969 - 26031037
Alignment:
Q  162 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 232  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| ||||| |||||    
T  26030969 aaaaatggaatatatattaac-accaaaagcaa-ctcctctagcacaaggtgtgctaaaagaattgcttta 26031037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 45256495 - 45256421
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactt 230  Q
    ||||||| |||||| ||||||||||||||||||||| | ||||||||||||||||||| ||| ||| ||| |||||    
T  45256495 aacaatagaaaatgaaatatatattaaccaccaaaaac-aactcctctagcacaaggtgtgccaaaagaactactt 45256421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 17658310 - 17658385
Alignment:
Q  162 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaaca 238  Q
    ||||||||||||||||||||||||||||||| | ||||| ||||||||||| ||| ||| ||  ||||||| |||||    
T  17658310 aaaaatggaatatatattaaccaccaaaagc-agctcctgtagcacaaggtgtgccaaaagagctactttacaaaca 17658385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 29470866 - 29470828
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagca 193  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  29470866 aacaataaaaaatgaaatatatattaaccaccaaaagca 29470828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 31082277 - 31082242
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaa 190  Q
    |||||||||||||||||| |||||||||||||||||    
T  31082277 aacaataaaaaatggaatttatattaaccaccaaaa 31082242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 26526001 - 26526073
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 229  Q
    ||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| ||||||| ||||||||    
T  26526001 aacaataaaaaatggaatatatattaa-caccaaaagc-aacttctctagcacaaggtgtgctaaaagaattact 26526073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 17079860 - 17079785
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 232  Q
    |||||| ||||||||||| |||||||||||||||||| |||||| ||||||||||||| ||| ||| ||| |||||||    
T  17079860 aacaatcaaaaatggaat-tatattaaccaccaaaag-aaactcttctagcacaaggtgtgccaaaagaactacttta 17079785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 17874471 - 17874395
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 232  Q
    ||||||||||||||||||||||||||| |||||||||| |||||| ||| |||||| | ||| | | |||||||||||    
T  17874471 aacaataaaaaatggaatatatattaaacaccaaaagc-aactcccctaacacaagttgtgccagaagaattacttta 17874395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 6831600 - 6831525
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 232  Q
    |||||| ||||||||||| |||||||| |||||||||||| ||| ||||||||||||| ||| ||| ||| |||||||    
T  6831600 aacaatcaaaaatggaat-tatattaatcaccaaaagcaa-ctcttctagcacaaggtgtgccaaaagaactacttta 6831525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 21252022 - 21251971
Alignment:
Q  159 ataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 212  Q
    ||||||||||||||||||||||| |||||| ||| |||||||||||||||||||    
T  21252022 ataaaaaatggaatatatattaa-caccaagagc-aactcctctagcacaaggt 21251971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 6997 - 7070
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctct-agcacaaggtatgctaaaggaattact 229  Q
    ||||||||||||||||||||||||||| ||||| |||| ||||||||| ||||||| || ||||||| ||||||||    
T  6997 aacaataaaaaatggaatatatattaa-caccagaagc-aactcctctaagcacaaagtgtgctaaaagaattact 7070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 11550 - 11605
Alignment:
Q  155 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaagg 211  Q
    |||||| |||||||| |||||||||||||||||||||| | ||||| ||||||||||    
T  11550 aacaatcaaaaatgggatatatattaaccaccaaaagc-agctcctatagcacaagg 11605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 181607 - 181655
Alignment:
Q  162 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 212  Q
    ||||||||||| ||||||||||||||||||| ||||| |||||||||||||    
T  181607 aaaaatggaat-tatattaaccaccaaaagc-aactcttctagcacaaggt 181655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 8450 - 8404
Alignment:
Q  162 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaag 210  Q
    ||||||||||| ||||||||||||||||||| ||||| |||||||||||    
T  8450 aaaaatggaat-tatattaaccaccaaaagc-aactcttctagcacaag 8404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University