View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_142 (Length: 276)
Name: NF8180A_low_142
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_142 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 35354525 - 35354264
Alignment:
| Q |
13 |
aatatttgatcatccctgcaaatgccacacagtcaaaatcttaacatagattaatgtttaatagaaagagtattatttaaagggnnnnnnnnnnnnnnn- |
111 |
Q |
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| T |
35354525 |
aatatttgatcatccctgcaaatgccaaacagtcaaaatcttaacatagattaatgtttaatagaaaaagtattatttaaagggaaaataaaaaaaaaaa |
35354426 |
T |
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| Q |
112 |
---ttggaactaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354425 |
aaattggaactaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaat |
35354326 |
T |
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| Q |
209 |
agaaatccaaatctggttgtgtagcattctgatcaacataaaaggaaatatgacatggtaca |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354325 |
agaaatccaaatctggttgtgtagcattctgatcaacataaaaggaaatatgacatggtaca |
35354264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 112 - 261
Target Start/End: Complemental strand, 35369456 - 35369307
Alignment:
| Q |
112 |
ttggaactaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaataga |
211 |
Q |
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|||||| ||||||||||||||||||||| |||||||| |||||||||| |||||||||||| |||||||| ||| ||||||||| || ||||| ||||| |
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| T |
35369456 |
ttggaattaaccaattggtttctctatcgacttgttcaaattcaaggcttttgtcaacaattttgcttttgcctctagcagtttcatatcgtgagataga |
35369357 |
T |
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| Q |
212 |
aatccaaatctggttgtgtagcattctgatcaacataaaaggaaatatga |
261 |
Q |
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| T |
35369356 |
aatccaaatctgattgtgtagcattctgaccaatataaaaggacatatga |
35369307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 129 - 261
Target Start/End: Complemental strand, 35378323 - 35378191
Alignment:
| Q |
129 |
gtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaatctggttgt |
228 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||| || |||| |||||||||||||| || ||||| | |||| ||||||| || |||| |
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| T |
35378323 |
gtttctctgtcgacttgttcgaattcaaggcctttgtcaacaattctgtttttgcctttagcagtttgatagcgtgagacagaagtccaaatttgattgt |
35378224 |
T |
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| Q |
229 |
gtagcattctgatcaacataaaaggaaatatga |
261 |
Q |
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| T |
35378223 |
gtagcattctgaccaatgcaaaaggaaatatga |
35378191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 120 - 261
Target Start/End: Complemental strand, 19683783 - 19683642
Alignment:
| Q |
120 |
aaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaa |
219 |
Q |
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||||||||||||||||| || ||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||| | |
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| T |
19683783 |
aaccaattggtttctctgtcgacttggtcgaattccaggcctttgtcaacaattcttctttttcctttagcagtttggtagcgtgagatagaaatccata |
19683684 |
T |
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| Q |
220 |
tctggttgtgtagcattctgatcaacataaaaggaaatatga |
261 |
Q |
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|||| || ||||||||||||| ||| ||| |||| ||||||| |
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| T |
19683683 |
tctgattatgtagcattctgaccaatatataagggaatatga |
19683642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 120 - 261
Target Start/End: Original strand, 19632560 - 19632701
Alignment:
| Q |
120 |
aaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaa |
219 |
Q |
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||||| ||||||||||| || |||||||||||||| |||| |||||||||||| || |||| |||||||||||||| || ||||| ||||||||||| | |
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| T |
19632560 |
aaccagttggtttctctgtcgacttgttcgaattctaggcatttgtcaacaattctgtttttgcctttagcagtttgatagcgtgagatagaaatccaga |
19632659 |
T |
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| Q |
220 |
tctggttgtgtagcattctgatcaacataaaaggaaatatga |
261 |
Q |
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||||| ||||||||||||| | |||||| |||||||||||| |
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| T |
19632660 |
tctggctgtgtagcattctcacaaacatataaggaaatatga |
19632701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 19684091 - 19684048
Alignment:
| Q |
13 |
aatatttgatcatccctgcaaatgccacacagtcaaaatcttaa |
56 |
Q |
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|||||||||||||||||||||||| |||||| | |||||||||| |
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| T |
19684091 |
aatatttgatcatccctgcaaatgtcacacaatgaaaatcttaa |
19684048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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