View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_143 (Length: 276)

Name: NF8180A_low_143
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_143
NF8180A_low_143
[»] chr8 (2 HSPs)
chr8 (1-233)||(9264132-9264367)
chr8 (229-270)||(9264402-9264443)
[»] chr3 (4 HSPs)
chr3 (1-233)||(11775735-11775970)
chr3 (1-143)||(26378240-26378382)
chr3 (83-143)||(22452456-22452516)
chr3 (229-270)||(11776005-11776046)
[»] chr6 (2 HSPs)
chr6 (1-127)||(17350968-17351094)
chr6 (226-270)||(17350863-17350907)
[»] chr2 (4 HSPs)
chr2 (19-227)||(9746434-9746645)
chr2 (19-227)||(36769793-36770004)
chr2 (1-148)||(31319876-31320023)
chr2 (83-146)||(35318792-35318855)
[»] chr4 (3 HSPs)
chr4 (130-233)||(33471408-33471514)
chr4 (229-270)||(33471549-33471590)
chr4 (82-144)||(14155926-14155988)
[»] chr7 (2 HSPs)
chr7 (83-146)||(4183316-4183379)
chr7 (81-144)||(32929295-32929358)


Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 9264132 - 9264367
Alignment:
Q  1 attgggaggatgtcattccccaatgttacttctgtgtcatttgggaatgctagggaccccatttttgatgagaacatcatactgcagcctatcatttcac 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9264132 attgggaggatgtcattccccaatgttagttctgtgtcatttgggaatgctagggaccccatttttgatgagaacatcatactgcagcctatcatttcac 9264231  T
Q  101 ccatcaccacttatgatgagattttggggcaagacaagagaaaggtgcaaat---tgatggccttaaaaataaatcagttgcctgtatgaaagatggcaa 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| | || |||||||||||||||||||||||||||||| ||    
T  9264232 ccatcaccacttatgatgagattttggggcaagacaagagaaaggtgcaaattaatgatggtcctataaataaatcagttgcctgtatgaaagatggtaa 9264331  T
Q  198 agccttgagcaggttctggggagatgaagactctga 233  Q
    ||||||||||||||||||||||||||||||| ||||    
T  9264332 agccttgagcaggttctggggagatgaagacactga 9264367  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 9264402 - 9264443
Alignment:
Q  229 tctgaagtgaataaagccaagtttccagatgctactaagtac 270  Q
    |||||||||||||||||||||| |||| ||||||||||||||    
T  9264402 tctgaagtgaataaagccaagtctccatatgctactaagtac 9264443  T

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Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 11775735 - 11775970
Alignment:
Q  1 attgggaggatgtcattccccaatgttacttctgtgtcatttgggaatgctagggaccccatttttgatgagaacatcatactgcagcctatcatttcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11775735 attgggaggatgtcattccccaatgttacttctgtgtcatttgggaatgttagggaccccatttttgatgagaacatcatactgcagcctatcatttcac 11775834  T
Q  101 ccatcaccacttatgatgagattttggggcaagacaagagaaaggtgcaa---attgatggccttaaaaataaatcagttgcctgtatgaaagatggcaa 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| | || ||||| |||||||||||||||||||||||| ||    
T  11775835 ccatcaccacttatgatgagattttggggcaagacaagagaaaggtgcaaattattgatggtcctataaatatatcagttgcctgtatgaaagatggtaa 11775934  T
Q  198 agccttgagcaggttctggggagatgaagactctga 233  Q
    ||||||||||||||||||||||||||||||| ||||    
T  11775935 agccttgagcaggttctggggagatgaagacactga 11775970  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 26378382 - 26378240
Alignment:
Q  1 attgggaggatgtcattccccaatgttacttctgtgtcatttgggaatgctagggaccccatttttgatgagaacatcatactgcagcctatcatttcac 100  Q
    ||||||||| |||||||||||||||||||| |||||||| |||   |||||||||| || |||||| |||| ||  | | || ||||||||||||||| |    
T  26378382 attgggaggttgtcattccccaatgttactgctgtgtcacttgatgatgctagggatcctatttttcatgataatttgacaccgcagcctatcatttctc 26378283  T
Q  101 ccatcaccacttatgatgagattttggggcaagacaagagaaa 143  Q
    ||||||  |||  |||||||||||| |||||||||||||||||    
T  26378282 ccatcattactactgatgagattttagggcaagacaagagaaa 26378240  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 22452516 - 22452456
Alignment:
Q  83 tgcagcctatcatttcacccatcaccacttatgatgagattttggggcaagacaagagaaa 143  Q
    |||||||||||||||| |||||||| ||| ||||||||||||| |||| ||| ||||||||    
T  22452516 tgcagcctatcatttcccccatcactactaatgatgagattttagggccagataagagaaa 22452456  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 11776005 - 11776046
Alignment:
Q  229 tctgaagtgaataaagccaagtttccagatgctactaagtac 270  Q
    |||||||||||||||||||||| |||| ||||||||||||||    
T  11776005 tctgaagtgaataaagccaagtctccatatgctactaagtac 11776046  T

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Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 17351094 - 17350968
Alignment:
Q  1 attgggaggatgtcattccccaatgttacttctgtgtcatttgggaatgctagggaccccatttttgatgagaacatcatactgcagcctatcatttcac 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| |||||||| || ||||||||||||||||||||||||||||||    
T  17351094 attgggaggatgtcattccccgatgttacttctgtgtcatttgggaatactatggactccattttttataagaacatcatactgcagcctatcatttcac 17350995  T
Q  101 ccatcaccacttatgatgagattttgg 127  Q
    |||||||||||||||||||||||||||    
T  17350994 ccatcaccacttatgatgagattttgg 17350968  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 17350907 - 17350863
Alignment:
Q  226 gactctgaagtgaataaagccaagtttccagatgctactaagtac 270  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  17350907 gactctgaagtgaataaagccaagtttccagatgctgctaagtac 17350863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 9746434 - 9746645
Alignment:
Q  19 cccaatgttacttctgtgtcatttgggaatgctagggaccccatttttgatgagaacatcatactgcagcctatcatttcacccatcaccacttatgatg 118  Q
    ||||||| ||||||||||||||||||| ||| || |||||| ||||||||||||| ||  ||| ||||||||||||||||||| ||||||||| ||||||    
T  9746434 cccaatgctacttctgtgtcatttggggatgttatggaccctatttttgatgagaccactatattgcagcctatcatttcacctatcaccactaatgatg 9746533  T
Q  119 agattttggggcaagacaagagaaaggtgcaaat---tgatggccttaaaaataaatcagttgcctgtatgaaagatggcaaagccttgagcaggttctg 215  Q
    |||| || ||||||||||||| ||||||||||||   || ||| | |||||||||||||| ||| ||| ||  |||||| |||| |||||||| ||| ||    
T  9746534 agatattagggcaagacaagaaaaaggtgcaaattactgctggtcctaaaaataaatcagctgcatgtttgggagatggtaaagtcttgagcaagttatg 9746633  T
Q  216 gggagatgaaga 227  Q
    ||| ||||||||    
T  9746634 gggtgatgaaga 9746645  T

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Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 36769793 - 36770004
Alignment:
Q  19 cccaatgttacttctgtgtcatttgggaatgctagggaccccatttttgatgagaacatcatactgcagcctatcatttcacccatcaccacttatgatg 118  Q
    ||||||| ||||||||||||||||||| ||| || |||||| ||||||||||||| ||  ||| ||||||||||||||||||| ||||||||| ||||||    
T  36769793 cccaatgctacttctgtgtcatttggggatgttatggaccctatttttgatgagaccactatattgcagcctatcatttcacctatcaccactaatgatg 36769892  T
Q  119 agattttggggcaagacaagagaaaggtgcaaat---tgatggccttaaaaataaatcagttgcctgtatgaaagatggcaaagccttgagcaggttctg 215  Q
    |||| || ||||||||||||||||||||||||||   || ||| | |||||||||||||| ||| ||| | | |||||| |||| |||||||| ||| ||    
T  36769893 agatattagggcaagacaagagaaaggtgcaaattactgctggtcctaaaaataaatcagctgcatgtttaagagatggtaaagtcttgagcaagttatg 36769992  T
Q  216 gggagatgaaga 227  Q
    ||| || |||||    
T  36769993 gggtgaggaaga 36770004  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 31319876 - 31320023
Alignment:
Q  1 attgggaggatgtcattccccaatgttacttctgtgtcatttgggaatgctagggaccccatttttgatgagaacatcatactgcagcctatcatttcac 100  Q
    ||||||||||||||||||||||||| || | ||||||||||||| || |||||||| ||  ||| ||||   | ||||| | ||||||| |||| | | |    
T  31319876 attgggaggatgtcattccccaatgctattgctgtgtcatttggtaaggctagggatcctttttatgatactaccatcacattgcagcccatcactaccc 31319975  T
Q  101 ccatcaccacttatgatgagattttggggcaagacaagagaaaggtgc 148  Q
    | ||||||||| |||||||||| || || ||||| |||| ||||||||    
T  31319976 ctatcaccactcatgatgagatattaggacaagataagaaaaaggtgc 31320023  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 35318792 - 35318855
Alignment:
Q  83 tgcagcctatcatttcacccatcaccacttatgatgagattttggggcaagacaagagaaaggt 146  Q
    |||||||||||||||| || ||||| ||| ||||||||||||| |||| ||| || ||||||||    
T  35318792 tgcagcctatcatttcccctatcactactaatgatgagattttagggccagataaaagaaaggt 35318855  T

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Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 130 - 233
Target Start/End: Original strand, 33471408 - 33471514
Alignment:
Q  130 caagacaagagaaaggtgcaaatt---gatggccttaaaaataaatcagttgcctgtatgaaagatggcaaagccttgagcaggttctggggagatgaag 226  Q
    ||||||||||||||||||||||||   ||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33471408 caagacaagagaaaggtgcaaattactgatggccctataaataaatcagttgcctgtatgaaagatggtaaagccttgagcaggttctggggagatgaag 33471507  T
Q  227 actctga 233  Q
    || ||||    
T  33471508 acactga 33471514  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 33471549 - 33471590
Alignment:
Q  229 tctgaagtgaataaagccaagtttccagatgctactaagtac 270  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  33471549 tctgaagtgaataaagtcaagtttccagatgctactaagtac 33471590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 14155926 - 14155988
Alignment:
Q  82 ctgcagcctatcatttcacccatcaccacttatgatgagattttggggcaagacaagagaaag 144  Q
    ||||||||||||||||| |||||||| |||  ||||||| |||| |||||||| |||||||||    
T  14155926 ctgcagcctatcatttctcccatcactactattgatgagtttttagggcaagataagagaaag 14155988  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 4183379 - 4183316
Alignment:
Q  83 tgcagcctatcatttcacccatcaccacttatgatgagattttggggcaagacaagagaaaggt 146  Q
    |||||||||||||||| |||||||| ||| ||||||||||||| |||| ||| |||||||||||    
T  4183379 tgcagcctatcatttcccccatcactactaatgatgagattttagggctagataagagaaaggt 4183316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 32929358 - 32929295
Alignment:
Q  81 actgcagcctatcatttcacccatcaccacttatgatgagattttggggcaagacaagagaaag 144  Q
    |||||||||||||||||| ||||| || ||| |||||||||| || ||| |||||| |||||||    
T  32929358 actgcagcctatcatttctcccataactactaatgatgagatgttagggaaagacaggagaaag 32929295  T

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