View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_147 (Length: 274)
Name: NF8180A_low_147
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_147 |
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| [»] scaffold0334 (1 HSPs) |
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Alignment Details
Target: scaffold0334 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 10 - 272
Target Start/End: Complemental strand, 16727 - 16465
Alignment:
| Q |
10 |
ataatactccaagaaacataactgcaattggaatcgaacaccaaacaccaaacaatagcgcaaacaatgaaaatatatggattatatggcacacgtactc |
109 |
Q |
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| T |
16727 |
ataatactccaagaaacataactgcaattggaatcgaacaccaaacaccaaacagtagcgcaaacaatgaaaatatatggattatatggcacacgtactc |
16628 |
T |
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| Q |
110 |
agcaataacaattgttatatgctcagccccgcaacaatggaacagccaacaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcagc |
209 |
Q |
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| T |
16627 |
aacaataacaattgttatatgctcagtcccgcaacaatggaacagccaacaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcagc |
16528 |
T |
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| Q |
210 |
agttttgaaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgagtaat |
272 |
Q |
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| T |
16527 |
aactttgaaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgagtaat |
16465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 11177266 - 11177501
Alignment:
| Q |
19 |
caagaaacataactgcaattggaatcgaacaccaaacaccaaacaatagcgcaaacaatgaaaatatatggattatatggcacacgtactcagcaataac |
118 |
Q |
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| T |
11177266 |
caagaaacataactgcaattgaaatcgaacaccaaacaccaaacagtagcgcaaacaatgaaaatatatggattatatggcacacgtactcagcaataac |
11177365 |
T |
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| Q |
119 |
aattgttatatgctcagccccgcaacaatggaacagccaacaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcagcagttttgaa |
218 |
Q |
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| T |
11177366 |
aattgttatatactcagc------------------ccagcaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcagcagctttgaa |
11177447 |
T |
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| Q |
219 |
aataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgagtaat |
272 |
Q |
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| T |
11177448 |
aataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgagtaat |
11177501 |
T |
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