View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_15 (Length: 453)
Name: NF8180A_low_15
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 195 - 447
Target Start/End: Complemental strand, 6361059 - 6360807
Alignment:
| Q |
195 |
actcacggccaactcacttgcagctagagtaggtaagatatctccatgattatagtattggaaggcagaatatatgtaaccgtatgtttagcaatacaat |
294 |
Q |
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| T |
6361059 |
actcacggccaactcacttgcagctagagtaggtaagatatctccatgattatagtattggaaggcagaatatatgtaaccttatgtttagcaatacaat |
6360960 |
T |
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| Q |
295 |
tcgctcaaacctgaaatattgttcctgttatatggtctcagccgcataggtttttgcagcaattttgatccagtggcttactcccttcatttgtttcccc |
394 |
Q |
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| T |
6360959 |
tcgttcaaacctgaaatattgttcctgttatatggtctcagccgcataggtttttgcagcaattttgatccagtggcttactcccttcatttgtttcccc |
6360860 |
T |
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| Q |
395 |
tcataatcacgtggacattaacttcctccaacaacagcagcagcaacaccttt |
447 |
Q |
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| T |
6360859 |
tcataatcacgaggacattaacttcctccaacaacagcagcagcaacaccttt |
6360807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 7 - 194
Target Start/End: Complemental strand, 6361271 - 6361085
Alignment:
| Q |
7 |
tttggagttataccaagtaacagcatgtatggagaggttctacttgatatattggataatcctaacaaatattatttgtaattaatgtacagatattcac |
106 |
Q |
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| T |
6361271 |
tttggagttataccaagtaacaacatgtatgtagaggttctacttgatatattggataatcctaacaaatattatttgtaattaatgtacagatatttac |
6361172 |
T |
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| Q |
107 |
acttaagttagcacctgcacacttcaatgatatcatagcacactgcagctagctcacaatattaatgttagcacacttgcaagcagat |
194 |
Q |
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| T |
6361171 |
actt-agttagcacctgcacacttcaatgatatcatagcacactgcagctagctcacaatattaatgttagcacacttgcaagcagat |
6361085 |
T |
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