View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_150 (Length: 273)

Name: NF8180A_low_150
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_150
NF8180A_low_150
[»] chr3 (4 HSPs)
chr3 (8-267)||(21850790-21851049)
chr3 (8-77)||(31163375-31163444)
chr3 (17-74)||(51524634-51524691)
chr3 (199-246)||(22970514-22970561)
[»] chr1 (3 HSPs)
chr1 (8-89)||(39332106-39332187)
chr1 (40-74)||(41035308-41035342)
chr1 (17-77)||(17115025-17115085)
[»] chr8 (1 HSPs)
chr8 (40-77)||(8831556-8831593)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 267
Target Start/End: Original strand, 21850790 - 21851049
Alignment:
Q  8 agcagagaggggtttggaagcatgaatcagggtttggcttgaacggagtttgtcacttgtcaaactagcaaacatggtggtttgcaggttgtgtcatagg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21850790 agcagagaggggtttggaagcatgaatcagggtttggcttgaacggagtttgtcacttgtcaaactagcaaacatggtggtttgcaggttgtgtcatagg 21850889  T
Q  108 agtgatataagggtccctagatttgtctcatgaaacataagtgatcttgggaaatgaccgcctcccaggtatgccaccctaaccaagtgaagttgaagct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21850890 agtgatataagggtccctagatttgtctcatgaaacataagtgatcttggggaatgaccgcctcccaggtatgccaccctaaccaagtgaagttgaagct 21850989  T
Q  208 gaattggggaatgacatcctcccaatgtcagaagacttcgtaagatctgaggtatcatga 267  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21850990 gaattggggaatgacatcatcccaatgtcagaagacttcgtaagatctgaggtatcatga 21851049  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 31163375 - 31163444
Alignment:
Q  8 agcagagaggggtttggaagcatgaatcagggtttggcttgaacggagtttgtcacttgtcaaactagca 77  Q
    |||||| |||||||| |||||| ||| || ||||||| ||||| |||| |||||||||||||||||||||    
T  31163375 agcagaaaggggtttagaagcaggaaccaaggtttggtttgaagggagcttgtcacttgtcaaactagca 31163444  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 51524691 - 51524634
Alignment:
Q  17 gggtttggaagcatgaatcagggtttggcttgaacggagtttgtcacttgtcaaacta 74  Q
    |||||||||| |||||| || | ||||||||||| |||| ||||||||||||||||||    
T  51524691 gggtttggaaacatgaaccaagatttggcttgaagggagcttgtcacttgtcaaacta 51524634  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 22970514 - 22970561
Alignment:
Q  199 gttgaagctgaattggggaatgacatcctcccaatgtcagaagacttc 246  Q
    |||||||||||| |||||||||||| ||||||| |||||||| |||||    
T  22970514 gttgaagctgaactggggaatgacaccctcccagtgtcagaaaacttc 22970561  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 39332187 - 39332106
Alignment:
Q  8 agcagagaggggtttggaagcatgaatcagggtttggcttgaacggagtttgtcacttgtcaaactagcaaacatggtggtt 89  Q
    |||||| ||||||||||||||| | |||| ||||||||||||| |||| |||||||| |  || ||||||||  ||||||||    
T  39332187 agcagaaaggggtttggaagcagggatcaaggtttggcttgaagggagcttgtcactagataagctagcaaatctggtggtt 39332106  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 41035308 - 41035342
Alignment:
Q  40 tttggcttgaacggagtttgtcacttgtcaaacta 74  Q
    ||||||||||| |||||||||||||||||||||||    
T  41035308 tttggcttgaagggagtttgtcacttgtcaaacta 41035342  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 17115025 - 17115085
Alignment:
Q  17 gggtttggaagcatgaatcagggtttggcttgaacggagtttgtcacttgtcaaactagca 77  Q
    |||||||||| |||||| || | |||||||||||  ||| |||||| ||||||||||||||    
T  17115025 gggtttggaaccatgaaccaagatttggcttgaagagagcttgtcatttgtcaaactagca 17115085  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 8831556 - 8831593
Alignment:
Q  40 tttggcttgaacggagtttgtcacttgtcaaactagca 77  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  8831556 tttggcttgaagggagcttgtcacttgtcaaactagca 8831593  T

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