View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_154 (Length: 268)
Name: NF8180A_low_154
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_154 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 8401292 - 8401539
Alignment:
| Q |
1 |
agtgacttcgcgttcta-aaaacagaaaaagtttatcctagatatacgagagaataggtatatgaaaatgtaatttatgttgatagttgaaaagaaaaat |
99 |
Q |
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| T |
8401292 |
agtgacttcgcgttctataaaacagaaaaagtttatcctagatatatgagagaataggtatatgaaaatgtaatgtatgttgatagttgaaaagaaaaat |
8401391 |
T |
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| Q |
100 |
tttacaaactacaattcgtgcaacaagtttgttcaaacaattcctcnnnnnnnnngtttgttcaaataaatcatacaacaagctggtcttgtcttgttta |
199 |
Q |
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| T |
8401392 |
tttacaaactacaattcgtgcaacaagtttgttcaaacaattcctc--aaaaaaagtttgttcaaat----------acaagctggtcttgtcttgttta |
8401479 |
T |
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| Q |
200 |
ttagttcctatcttgttcatggtgagagctctttccaccaagtgtccaagtcagtataat |
259 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8401480 |
ttagttcctatcttgttcaaggtgagagctctttccaccaagtgtccaagtcagtataat |
8401539 |
T |
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