View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_165 (Length: 262)
Name: NF8180A_low_165
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_165 |
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| [»] scaffold0179 (1 HSPs) |
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| [»] scaffold0177 (1 HSPs) |
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Alignment Details
Target: scaffold0179 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 1871 - 1637
Alignment:
| Q |
1 |
tagaatgaagaatgccacatatgtcatccatcctatcaatatacaagtatgaagaatcgcaacggaaccataagagttagatgaggaactcaatgacgca |
100 |
Q |
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| T |
1871 |
tagaaagatgaatgccacatatgtcatccatcctatcaatatacaagtatgaagaatcgcaacggaaccataagagttagatgaggaactcaatgacgca |
1772 |
T |
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| Q |
101 |
ctagagctagatgaggnnnnnnnnttacaccaaattcaacctactaaaaacctgtcgagacacgaagtattacaaaagccttacgccacctaatctaagc |
200 |
Q |
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| T |
1771 |
ctagagctagatgaggaaaaaaaattacaccaaattcaacctactaaaaacctgtcaagacaccaagtattacataggccttacgccacctaatctaaac |
1672 |
T |
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| Q |
201 |
tagaaagtaagcaaaaccaaaattaaagatacatt |
235 |
Q |
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|||||||||| |||||||||||||||||||||||| |
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| T |
1671 |
tagaaagtaatcaaaaccaaaattaaagatacatt |
1637 |
T |
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Target: scaffold0177 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 85 - 228
Target Start/End: Complemental strand, 30204 - 30061
Alignment:
| Q |
85 |
ggaactcaatgacgcactagagctagatgaggnnnnnnnnttacaccaaattcaacctactaaaaacctgtcgagacacgaagtattacaaaagccttac |
184 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||| |
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| T |
30204 |
ggaactcaatgagacactagagctagatgaggaaaaaaaattacaccaaattcaacctactaaaaacctgtcgagacaccaagtattatgaaacccttaa |
30105 |
T |
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| Q |
185 |
gccacctaatctaagctagaaagtaagcaaaaccaaaattaaag |
228 |
Q |
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| T |
30104 |
gccacctaatctaaactagaaagtaagaaaaaccaaaattaaag |
30061 |
T |
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