View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_167 (Length: 261)
Name: NF8180A_low_167
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_167 |
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Alignment Details
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 22270498 - 22270322
Alignment:
| Q |
1 |
agcacagtgacatatctctcgagaaaagccgatatataaaaagtaaacttcctttaggtatnnnnnnn------ggtaattaaggttttataccttggtc |
94 |
Q |
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| T |
22270498 |
agcacaatgacatatctcccgagaaaaaccgatatataaaaactaaacatcctttaggtataaaaaaaaaagaaggtaattaacgttttatatcttggtc |
22270399 |
T |
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| Q |
95 |
taaagttggaactggtttggtttggagcttagtttatcttcatatttatgcggacgtagaaaaccttattttgttaa |
171 |
Q |
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| T |
22270398 |
taaagtttgaactggtttggtttggagcttagtttatgttcatatttatgcggacgtaaaaaaccttattttgttaa |
22270322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 22269345 - 22269296
Alignment:
| Q |
167 |
gttaacacttaattttatcagtagattgatatgcaaataatactttcctc |
216 |
Q |
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| T |
22269345 |
gttaacacttaattttattagtagattggtatgcaaataatactttcctc |
22269296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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