View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8180A_low_170 (Length: 260)
Name: NF8180A_low_170
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_170 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 3 - 248
Target Start/End: Original strand, 18314745 - 18314990
Alignment:
| Q |
3 |
actaaagaggaaaacaacataaaataaaatataaaagaaaccttcatagacccatgtagcaaaatttcttttaatgtttcacagatttaactgtattgaa |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18314745 |
actaaagaggaaaacaacataaaataaaatataaaagaaaccttcatagacccatgtagcaaaatttcttttaatgtttcacagatctaactgtattgaa |
18314844 |
T |
|
| Q |
103 |
ctttcagattccagagttttataaggtaaatgcttccgaacaaatatgagagatggacaaattaagacactactgtaacaaaaaagtactagcaattgaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
18314845 |
ctttcagattccagagttttataaggtaaatgcttccgaacaaatatgagagatggacaaattaagacactactgtgacaaaaaagtactagcaatcgaa |
18314944 |
T |
|
| Q |
203 |
cgaattacctgcaatcgtatcttctgcacttgataaaccagatatt |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18314945 |
cgaattacctgcaatcgtatcttctgcacttgataaaccagatatt |
18314990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 18304358 - 18304447
Alignment:
| Q |
160 |
caaattaagacactactgtaacaaaaaa-gtactagcaattgaacgaattacctgcaatcgtatcttctgcacttgataaaccagatatt |
248 |
Q |
| |
|
|||||||||| |||||| | |||||||| | ||||||||||||||||||||| ||| | |||||||||||||||||||||| ||||||| |
|
|
| T |
18304358 |
caaattaagatactactatgacaaaaaaagcactagcaattgaacgaattacttgcgacagtatcttctgcacttgataaactagatatt |
18304447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 18304194 - 18304235
Alignment:
| Q |
33 |
ataaaagaaaccttcatagacccatgtagcaaaatttctttt |
74 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
18304194 |
ataaaagaaaccttcatagagacatgtagcaaaacttctttt |
18304235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 119
Target Start/End: Original strand, 18304266 - 18304295
Alignment:
| Q |
90 |
taactgtattgaactttcagattccagagt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
18304266 |
taactgtattgaactttcagattccagagt |
18304295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University