View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_175 (Length: 258)
Name: NF8180A_low_175
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_175 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 8705652 - 8705417
Alignment:
| Q |
13 |
gggttcaaagttcaaaatttcaaacaatgaatacaataaacatcaaattacagaacagccaatcagaaaggaaaattattaaatcctggataaactcatg |
112 |
Q |
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| T |
8705652 |
gggttcaaagttcaaaatttcaaacaatgaatccaataaacatcaaattacagaacagccaatcagagaggaaaattattaaatcctggataaactcatg |
8705553 |
T |
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| Q |
113 |
ttttgtcatactcatttaaatgaataaataaaaactcagataaactcatttaaagcctttaatgtaacaaaacaaaccttgtcatcttcaaaggtggtat |
212 |
Q |
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| T |
8705552 |
ttttgtcatactcatttaaataaataaataaaaactcaaataaactcatttaaagcctttattgtaacaaaacaaaccttgtcatcttcaaaggtggtat |
8705453 |
T |
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| Q |
213 |
catgatattcatgaatcacccagctgcttttaacac |
248 |
Q |
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| T |
8705452 |
catgatattcatgaatcacccagctgcttttaacac |
8705417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 118 - 248
Target Start/End: Original strand, 14372181 - 14372310
Alignment:
| Q |
118 |
tcatactcatttaaatgaataaataaaaactcagataaactcatttaaagcctttaatgtaacaaaacaaaccttgtcatcttcaaaggtggtatcatga |
217 |
Q |
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| T |
14372181 |
tcatactcatttaaataaataaataataactcaaataaactcatttaaaacctttattgtaacaaaacaaacctggt-atcttcaaaggtggtatcatga |
14372279 |
T |
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| Q |
218 |
tattcatgaatcacccagctgcttttaacac |
248 |
Q |
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| T |
14372280 |
tattcatgaatcacccggctgcttttaacac |
14372310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 8691210 - 8691137
Alignment:
| Q |
175 |
tgtaacaaaacaaaccttgtcatcttcaaaggtggtatcatgatattcatgaatcacccagctgcttttaacac |
248 |
Q |
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| T |
8691210 |
tgtaacaaaacaaacctggttatcatgaaaggtggcagaatgatattcatgaatcacccagttgcttttaacac |
8691137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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