View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_187 (Length: 255)
Name: NF8180A_low_187
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_187 |
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| [»] scaffold0133 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 41222154 - 41222322
Alignment:
| Q |
7 |
ataactgctgatgcccgccgctgccggactggtagggcgccatgacttctcttcaagaattacatatcagtgagtttccaaagataaggtcgctagcttt |
106 |
Q |
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| T |
41222154 |
ataactgctgatgcccgccgctgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttcgaaagataaggtcgctagattt |
41222253 |
T |
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| Q |
107 |
cagcaactccgagacatgcaaaagttaagtattgttaatttctctatgttgaagtagtgatcccagcaa |
175 |
Q |
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| T |
41222254 |
cagcaactccgaaacatgcaaaagttaagtattgttaatttctctatgttgaagtagtgatcccagcaa |
41222322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 41222675 - 41222752
Alignment:
| Q |
173 |
caattaatgtaatgtaaatttattgtgacacg--atatatatcttaaatatatggtcactttataaaaatattcttgg |
248 |
Q |
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| T |
41222675 |
caattaatgtaatgtaaatttattgtaacacgatatatatatcttaaatatatggtcacttcataaaaatatttttgg |
41222752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 13375997 - 13375861
Alignment:
| Q |
28 |
tgccggactggtagggcgccatgacttctcttcaagaattacatatcagtgagtttccaaagataaggtcgcta-------gctttcagcaactccgaga |
120 |
Q |
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| T |
13375997 |
tgccagactggttgggtgccatgactactcttcaaagattaaaaatcagtgggtttccgaagttaaggtcactaccagacagctttcagcaactccgaaa |
13375898 |
T |
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| Q |
121 |
catgcaaaagttaagtattgttaatttctctatgttg |
157 |
Q |
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| T |
13375897 |
cttgcaaaggttaagtattgttagttgctctatgttg |
13375861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 16985359 - 16985223
Alignment:
| Q |
28 |
tgccggactggtagggcgccatgacttctcttcaagaattacatatcagtgagtttccaaagataaggtcgct-------agctttcagcaactccgaga |
120 |
Q |
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| T |
16985359 |
tgccagactgtttgggtgccatgacttctcttcaagaattatacatcattgactttccaaagttaagttcactaccagacagctttcagcaactccgaaa |
16985260 |
T |
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| Q |
121 |
catgcaaaagttaagtattgttaatttctctatgttg |
157 |
Q |
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| T |
16985259 |
tttgcaaaagttaattattattgattgccctatgttg |
16985223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 38943064 - 38942998
Alignment:
| Q |
28 |
tgccggactggtagggcgccatgacttctcttcaagaattacatatcagtgagtttccaaagataag |
94 |
Q |
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| T |
38943064 |
tgccggactggttgggtgccatgacttctcttcaaagattacaaatcagtgggtttccgaagttaag |
38942998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 7055522 - 7055564
Alignment:
| Q |
28 |
tgccggactggtagggcgccatgacttctcttcaagaattaca |
70 |
Q |
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| T |
7055522 |
tgccggactggttgggtgccatgacttctcttcaagtattaca |
7055564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 38941597 - 38941663
Alignment:
| Q |
28 |
tgccggactggtagggcgccatgacttctcttcaagaattacatatcagtgagtttccaaagataag |
94 |
Q |
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| T |
38941597 |
tgccagactggttgggtgccatgacttctcttcaagtattacacatccttaagtttccaaagttaag |
38941663 |
T |
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Target: scaffold0133 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 6415 - 6375
Alignment:
| Q |
28 |
tgccggactggtagggcgccatgacttctcttcaagaatta |
68 |
Q |
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| T |
6415 |
tgccggactggttgggtgccatgacttctcttcaagtatta |
6375 |
T |
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