View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_188 (Length: 254)
Name: NF8180A_low_188
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_188 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 33550489 - 33550250
Alignment:
| Q |
3 |
agatatagaaaaatatgaaaatgaactatataaattgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgac |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33550489 |
agatatagaaaaatatgaaaatgaactatataaattgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgac |
33550390 |
T |
|
| Q |
103 |
ttcctctggatacatgctacgactatgaaaagaaggtattttagtagcgcaaaatacttccctgaacattataactttaaaaagattatttccgtagtat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33550389 |
ttcctctggatacatgctacgactatgaaaagaaggtattttagtagcgcaaaatacttccctgaacattataactttaaaaagattatttccgtagtat |
33550290 |
T |
|
| Q |
203 |
ccaaaaataatgtcaacattgtctggaaaatgatgatatt |
242 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |
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| T |
33550289 |
ccaaaaataatgtcaacattgtttggaaaatgatgatatt |
33550250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 26230864 - 26230624
Alignment:
| Q |
3 |
agatatagaaaaatatgaaaatgaactatataaattgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgac |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26230864 |
agatatagaaaaatatgaaaatgaactatataaattgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgac |
26230765 |
T |
|
| Q |
103 |
ttcctctggatacatgctacgactatgaaaagaaggtattttagtagcgcaaaatacttccctgaacattataactttaaaaag-attatttccgtagta |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26230764 |
ttcctctggatacatgctacgactatgaaaagaaggtattttagtagcgcaaaatacttccctgaacattataactttaaaaagaattatttccgtagta |
26230665 |
T |
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| Q |
202 |
tccaaaaataatgtcaacattgtctggaaaatgatgatatt |
242 |
Q |
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| T |
26230664 |
tccaaaaataatgtcaacattgtctggaaaatgatgatatt |
26230624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 8335343 - 8335582
Alignment:
| Q |
3 |
agatatagaaaaatatgaaaatgaactatataaattgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgac |
102 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8335343 |
agatatagaaacatatgaaaatgaactatataaattgataatgtaccttgattggagtgttgaaatcattatcagaaatgtgtatatcaaatataatgac |
8335442 |
T |
|
| Q |
103 |
ttcctctggatacatgctacgactatgaaaagaaggtattttagtagcgcaaaatacttccctgaacattataactttaaaaagattatttccgtagtat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8335443 |
ttcctctggatacatgctacgactatgaaaagaaggtattttagtagcgcaaaaaacttccctgaacattataactttaaaaagattatttccatagtat |
8335542 |
T |
|
| Q |
203 |
ccaaaaataatgtcaacattgtctggaaaatgatgatatt |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
8335543 |
ccaaaaataatgtcaacattgtctggaaaatgatgatatt |
8335582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 3 - 177
Target Start/End: Original strand, 4684775 - 4684949
Alignment:
| Q |
3 |
agatatagaaaaatatgaaaatgaactatataaattgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgac |
102 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4684775 |
agatatagaaaaatatgaaaatgaactatataaattgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgac |
4684874 |
T |
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| Q |
103 |
ttcctctggatacatgctacgactatgaaaagaaggtattttagtagcgcaaaatacttccctgaacattataac |
177 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4684875 |
ttcctctggatacatgctacgactatgaaaagaaggtattttagtagcgcaaaatacttccctgaacattataac |
4684949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 242
Target Start/End: Complemental strand, 26632775 - 26632567
Alignment:
| Q |
34 |
aaattgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaa |
133 |
Q |
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|||||||||| ||||| | |||||| | |||| ||||| ||| |||| | ||||||||| | | || ||| | |||||||||| | |||||||||||| |
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| T |
26632775 |
aaattgataatgtaccataattggatttgttaagtcattctcataaatctagatatcaaattttaggatttcatttggatacatgatgcgactatgaaaa |
26632676 |
T |
|
| Q |
134 |
gaaggtattttagtagcgcaaaatacttccctgaacattataactttaaaaagattatttccgtagtatccaaaaataatgtcaacattgtctggaaaat |
233 |
Q |
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| || |||| ||| ||||| ||| |||||||||||||||||||||||||||||| || |||||||||| |||||||||||| || | ||||| |
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| T |
26632675 |
gctggaatttcggtacatcaaaaattttctctgaacattataactttaaaaagattatttttatattatccaaaaagaatgtcaacattatcggaaaaat |
26632576 |
T |
|
| Q |
234 |
gatgatatt |
242 |
Q |
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||||||||| |
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| T |
26632575 |
gatgatatt |
26632567 |
T |
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