View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_189 (Length: 253)
Name: NF8180A_low_189
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_189 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 35617982 - 35617739
Alignment:
| Q |
1 |
tcaaatgccacttttttatatatttctgatctctttcctgcactccatatggcacatcagtagtactagtaccatgtttaagatcttcctgcacaatact |
100 |
Q |
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| T |
35617982 |
tcaaatgccacttttttatatatttctgatctctttcctgcactccatatggcacatcagtagtactagtaccatgtttaagatcttccttcacaatact |
35617883 |
T |
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| Q |
101 |
cttctcctgcactttatattcgccttcggctgttacttcctcctccaatatcccagtatcgtaaactggaaacttgactgtttttgttgctgttgatttc |
200 |
Q |
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| T |
35617882 |
cttctcctgcactttatattcgccttcggctgttacttcctcctccattatcccagtatcgcaaaccggaaacttgactgcttttgttgctgttgatttc |
35617783 |
T |
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| Q |
201 |
acagtagcactttcatcatttttcttacatgcatccatattctt |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35617782 |
acagtagcactttcatcatttttcttacatgcatccatattctt |
35617739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 35616950 - 35616883
Alignment:
| Q |
1 |
tcaaatgccacttttttatatatttctgatctctttcctgcactccatatggcacatcagtagtacta |
68 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||| |
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| T |
35616950 |
tcaaatgccacttttttatatatttctgatctctttcttgcactccatatgccacactagtagtacta |
35616883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 28438050 - 28438094
Alignment:
| Q |
12 |
ttttttatatatttctgatctctttcctgcactccatatggcaca |
56 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28438050 |
ttttttatatatttctgatctctttcctgcactccatatgccaca |
28438094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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