View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_195 (Length: 250)
Name: NF8180A_low_195
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_195 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 42039638 - 42039403
Alignment:
| Q |
10 |
aaaaatatccacctcaataaagaataacctaggacggtttttgaggtgaaactcttcaacaggaagctgtgattggcactggttctactaaagccttcgt |
109 |
Q |
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| T |
42039638 |
aaaaatatccacctcaataaagaataacctaggacggtttttgaggtgaaactcttcaacaggaagctgtgattggcactggttctactaaagccttcgt |
42039539 |
T |
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| Q |
110 |
gccgccggtaactccattttctcctttatgaatcttgtcggccgccatggcaacaaagctctcaaagcaatcctccaagctcctgaatgattcaccagga |
209 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42039538 |
gccaccggtaactccattttctcctttatgaatcttgtcggccgccatggcaacaaagctctcaaagcaatcctccaagctcctgaatgattcaccagga |
42039439 |
T |
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| Q |
210 |
tatagagtgcttatctcaacatcatgatgtccatct |
245 |
Q |
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||||||||||||||||||||||||||| ||||||| |
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| T |
42039438 |
tatagagtgcttatctcaacatcatgaattccatct |
42039403 |
T |
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