View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_199 (Length: 250)
Name: NF8180A_low_199
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_199 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 8293848 - 8293622
Alignment:
| Q |
14 |
ataaaaacaacagaaacgtgtacattgcagaaactgataatcaatttaatcgtcacgagagaaaacaatactaacctaactattaacatactaatattct |
113 |
Q |
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| T |
8293848 |
ataaaaacaacagaaacgtgtacattgcagaaactgataatcaatttaatcgtcacgagagaaaacaatactaacctaactattaacatactaatattct |
8293749 |
T |
|
| Q |
114 |
acatttgttattnnnnnnntagcacctaaaccagagatgcaattaattatatggagatcaaatgcacatgacacggacgctatacaaaacgcagcaacaa |
213 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8293748 |
acatttgttattaaaaaaatagcacctaaaccagagatgcaattaattatatggagatcaaatgcacatgacacggacgctatacaaaacgcagcaacaa |
8293649 |
T |
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| Q |
214 |
aatatctggaatcagagaaattaacac |
240 |
Q |
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||||||||||||||||||||||||||| |
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| T |
8293648 |
aatatctggaatcagagaaattaacac |
8293622 |
T |
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