View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_2 (Length: 616)
Name: NF8180A_low_2
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 20 - 600
Target Start/End: Original strand, 29204106 - 29204686
Alignment:
| Q |
20 |
gaagagagttcagtggatgatgatacaatccgtagccttcgtgctagcccaattaatggtttttctaaggacagaacctctattgaagattttgaaataa |
119 |
Q |
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| T |
29204106 |
gaagagagttcagtggatgatgatacaatccgtagccttcgtgctagcccaattaatggtttttctaaggacagaacctctattgaagattttgaaataa |
29204205 |
T |
|
| Q |
120 |
taaaaccaataagcagaggtgcgtttggacgagtttttcttgcccagaaaagatcgactggtgatttatttgctattaaggtaagcttccttaaaccgaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204206 |
taaaaccaataagcagaggtgcgtttggacgagtttttcttgcccagaaaagatcgactggtgatttatttgctattaaggtaagcttccttaaaccgaa |
29204305 |
T |
|
| Q |
220 |
atgaatcaaataattactttgcagaaacaaagctagagagattgatttagcgaacgatgttataaaacagtgcgtacaaaaagcatgtatctattcctga |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29204306 |
atgaatcaaataattactttgcagaaacaaagctagagagattgatttagcgaactatgttattaaacagtgcgtacaaaaagcatgtatctattcctga |
29204405 |
T |
|
| Q |
320 |
agttgtaaaataaaactagtattattcagtccagcaatggtgttatagcttatagaaaccattagtatagaaagtcttgtcaaattaactaactgaataa |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204406 |
agttgtaaaataaaactagtattattcagtccagcaatggtgttatagcttatagaaaccattagtatagaaagtcttgtcaaattaactaactgaataa |
29204505 |
T |
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| Q |
420 |
ttagaaaacgtttaaactattctttgatatttttgtaggttctgaaaaaggcagatatgattcgtaaaaatgcagttgaaggtattttggctgagcgaga |
519 |
Q |
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| T |
29204506 |
ttagaaaacgtttaaactattctttgatatttttgtaggttctgaaaaaggcagatatgattcgtaaaaatgcagttgaaggtattttggctgagcgaga |
29204605 |
T |
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| Q |
520 |
cattcttatatctgttcgaaacccttttgtggtaagcaggccataccatgtcattcattactccatttatgaagttgatgt |
600 |
Q |
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| T |
29204606 |
cattcttatatctgttcgaaacccttttgtggtaagcaggccataccatgtcattcattacttcatttatgaagttgatgt |
29204686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 20 - 600
Target Start/End: Complemental strand, 12647770 - 12647190
Alignment:
| Q |
20 |
gaagagagttcagtggatgatgatacaatccgtagccttcgtgctagcccaattaatggtttttctaaggacagaacctctattgaagattttgaaataa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647770 |
gaagagagttcagtggatgatgatacaatccgtagccttcgtgctagcccaattaatggtttttctaaggacagaacctctattgaagattttgaaataa |
12647671 |
T |
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| Q |
120 |
taaaaccaataagcagaggtgcgtttggacgagtttttcttgcccagaaaagatcgactggtgatttatttgctattaaggtaagcttccttaaaccgaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647670 |
taaaaccaataagcagaggtgcgtttggacgagtttttcttgcccagaaaagatcgactggtgatttatttgctattaaggtaagcttccttaaaccgaa |
12647571 |
T |
|
| Q |
220 |
atgaatcaaataattactttgcagaaacaaagctagagagattgatttagcgaacgatgttataaaacagtgcgtacaaaaagcatgtatctattcctga |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||| |||||||| |
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| T |
12647570 |
atgaatcaaataattactttgcagaaacaaagctagagagattgatttagcaaactatgttattaaacagtgcatacaaaaagcatgtatccattcctga |
12647471 |
T |
|
| Q |
320 |
agttgtaaaataaaactagtattattcagtccagcaatggtgttatagcttatagaaaccattagtatagaaagtcttgtcaaattaactaactgaataa |
419 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12647470 |
agttgtaaaataaaactagtattattcagtccagcaacggtgttatagcttatagaaaccattagaatagaaagtcttgtcaaattaactaactgaataa |
12647371 |
T |
|
| Q |
420 |
ttagaaaacgtttaaactattctttgatatttttgtaggttctgaaaaaggcagatatgattcgtaaaaatgcagttgaaggtattttggctgagcgaga |
519 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647370 |
ttagaaaacgtttaaactattccttgatatttttgtaggttctgaaaaaggcagatatgattcgtaaaaatgcagttgaaggtattttggctgagcgaga |
12647271 |
T |
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| Q |
520 |
cattcttatatctgttcgaaacccttttgtggtaagcaggccataccatgtcattcattactccatttatgaagttgatgt |
600 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12647270 |
cattcttatatctgttcgaaatccttttgtggtaagcaggccataccatgtcattcattacttcatttatgaagttgatgt |
12647190 |
T |
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