View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_200 (Length: 250)
Name: NF8180A_low_200
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_200 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 31867595 - 31867816
Alignment:
| Q |
17 |
ttaatgggtatcatgttatcgagccaaatgtacaagcattagtattttgtttgatgattgatatttttatttatatttgtaaaacattaaatgactgaat |
116 |
Q |
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| T |
31867595 |
ttaatgggtatcatgttatcgagccaaatgtacaagcattagtattttgtttgatgattgatatttttatttatatttgtaaaacattaaatgactgcat |
31867694 |
T |
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| Q |
117 |
atcataaagttttaagaatctatatgatagatttggtttttgttacaagtacaattgaacttagtggagtttcctcatgatagcattcaggttttgggaa |
216 |
Q |
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| T |
31867695 |
atcataaagttttaagaatctatatgatagatttggtttttgttacaagtacaattgaacttagtggagtttcctcatgatagcattcaggttttgggaa |
31867794 |
T |
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| Q |
217 |
g---ttttcccgagttttcaat |
235 |
Q |
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| T |
31867795 |
gtttttttcccgagttttcaat |
31867816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 235
Target Start/End: Original strand, 31858758 - 31858973
Alignment:
| Q |
23 |
ggtatcatgttatcgagccaaatgtacaagcattagtattttgtttgatgattgatatttttattt---atatttgtaaaacattaaatgactgaatatc |
119 |
Q |
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| T |
31858758 |
ggtatcatgttatcaagcccaatgtgcaagcattagtattttatttgatgattggtatttttattttttatattcgttaaacattaaatgactgcatatc |
31858857 |
T |
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| Q |
120 |
ataaagttttaagaatctatatgatagatttggtttttgttacaagtacaattgaacttagtggagtttcctcatgatagcattcaggttttgggaag-- |
217 |
Q |
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| T |
31858858 |
ataaa-ttttcagaatccatatgatagatttgctttt-gttgtaagtacaattgaacttagtggagtttcctcatgatagcattcaaggcttgggaagtt |
31858955 |
T |
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| Q |
218 |
ttttcccgagttttcaat |
235 |
Q |
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| T |
31858956 |
ttttcccgagtttccaat |
31858973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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