View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8180A_low_201 (Length: 249)
Name: NF8180A_low_201
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_201 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 22270682 - 22270908
Alignment:
| Q |
5 |
agtagcggtttgttgattttggtgagcgacctcgatttgagtcgggattgtagtaggaattttatcttgattttcttctactcaggagagactcacattt |
104 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
22270682 |
agtagcggtttgttgattttggcgagcgacctcgatttgagttggtattgtggtaggaattttttcttgattttcttctactcaggagagactcacattt |
22270781 |
T |
|
| Q |
105 |
tgttgttggagtaggttgacaatgtttgtgatgtttgcaagaacatcgttcagataagtgacgctgaactgtgctactgagagttgaaaaaatcgcactt |
204 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
22270782 |
tgttgctggagtaagttgacaatgtttgtgatgtttgcaagaacatcattcaaataagtgacgtcgaactgtgctactgagagttgaaagaatcgcactt |
22270881 |
T |
|
| Q |
205 |
ggtgattttggtcttgctcgttctgat |
231 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
22270882 |
ggtgattttggtcttgctcgttctgat |
22270908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 31111899 - 31111773
Alignment:
| Q |
9 |
gcggtttgttgattttggtgagcgacctcgatttgagtcgggattgtagtaggaattttatcttgattttcttctactcaggagagactcacattttgtt |
108 |
Q |
| |
|
||||||||||||||| | ||| |||||| |||| |||| ||| || || |||||||| |||||||||||||||| | ||||| | |||| | || |
|
|
| T |
31111899 |
gcggtttgttgatttcgttgaacgaccttaatttaagtcacatttgcagcagaaattttatattgattttcttctacttgagtgagacacgcattctatt |
31111800 |
T |
|
| Q |
109 |
gttggagtaggttgacaatgtttgtga |
135 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
31111799 |
gttggagtaggttgacaatgtttgtga |
31111773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University