View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_205 (Length: 249)
Name: NF8180A_low_205
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_205 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 41256015 - 41255782
Alignment:
| Q |
1 |
tgattgttaccttatccttaaaattcacacgaatgaaatcccttaacccttttccatcatgcttcttgcacaatgcactcaacccttccaaatgagttat |
100 |
Q |
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| T |
41256015 |
tgattgttaccttatccttaaaattcacacgaatgaaatcccttaacccttttccatcattcttcttgcacaatgcactcaacccttccaaatgagttat |
41255916 |
T |
|
| Q |
101 |
agaccctgaaactgcaccgttttgaattgtagggttagaattcgaagatgggtcattattgattgatgaaaagttttgaattttgggttttggggtggat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
41255915 |
agaccctgaaactgcaccgttttgaattgtagggttagaattcgaagatgggtcattattgattgatgaaaagttttgatttttgggttttgtggtggat |
41255816 |
T |
|
| Q |
201 |
aattttgaagaagagattgatgggtcgttgtgat |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
41255815 |
aattttgaagaagagattgatgggtcgttgtgat |
41255782 |
T |
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