View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_21 (Length: 433)
Name: NF8180A_low_21
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 418
Target Start/End: Original strand, 25788172 - 25788576
Alignment:
| Q |
14 |
actatcatcataaaataacattacctggctatgctattc-tacaaaacatagacgataaccgcgtttcttaaaattttactttacaacataaagtgaatc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25788172 |
actatcatcataaaataacattacctggctatgctattcctacaaaacatagacgataacagcgtttcttaaaattttactttacaacataaagtgaatc |
25788271 |
T |
|
| Q |
113 |
caaactttagtttattggttttacacttgtggtcgtttgtttgccttaaaaatataaaggatttgacaatatactgtaattgttcatttagacttatcat |
212 |
Q |
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|||||||| |||||||||||||||||||||||||||||| || ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25788272 |
caaacttttgtttattggttttacacttgtggtcgtttgattaccttaaa--tataaaggatttgacagtatactgtaattgttcatttagacttatcat |
25788369 |
T |
|
| Q |
213 |
tcaataactttattggtacacttccctctttcagaatgagtaaagaacttcgatatttatcgctgttgcacaataatttg-tgggatgcggcttgaccaa |
311 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
25788370 |
tcaataactttattgctacacttccctctttcagaatgagtaaagaacttcgatatttatcgctgttgcacaataatttgacaggatgcggcttgaacaa |
25788469 |
T |
|
| Q |
312 |
tggcacaatgcggcttgacatgattcagaggctgcagagtttaaatacattaggcctctcatacaacaatttgtcagttgatataactttcaatgaaaat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25788470 |
tggcacaatgcggcttgacatgattcagaggctgcagagtttaaatacattaggcctctcatacaacaatttgtcagttgatataactttcaatgaaaat |
25788569 |
T |
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| Q |
412 |
catgatg |
418 |
Q |
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| T |
25788570 |
catgatg |
25788576 |
T |
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