View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_212 (Length: 248)

Name: NF8180A_low_212
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_212
NF8180A_low_212
[»] chr7 (1 HSPs)
chr7 (28-235)||(27651345-27651552)
[»] chr2 (4 HSPs)
chr2 (65-219)||(16576297-16576450)
chr2 (65-219)||(38576810-38576963)
chr2 (186-219)||(17606621-17606654)
chr2 (67-99)||(28282823-28282855)
[»] chr3 (2 HSPs)
chr3 (61-137)||(34761991-34762066)
chr3 (107-219)||(39341248-39341360)
[»] chr1 (8 HSPs)
chr1 (62-101)||(42819618-42819657)
chr1 (62-124)||(46080944-46081007)
chr1 (127-208)||(41148571-41148651)
chr1 (70-126)||(24873737-24873793)
chr1 (70-126)||(24874570-24874626)
chr1 (116-216)||(49897922-49898022)
chr1 (107-174)||(7104488-7104555)
chr1 (62-95)||(52432664-52432697)
[»] chr6 (1 HSPs)
chr6 (65-101)||(32342597-32342633)
[»] chr8 (2 HSPs)
chr8 (186-219)||(29093585-29093618)
chr8 (62-98)||(32166674-32166710)
[»] chr5 (2 HSPs)
chr5 (65-125)||(17736796-17736857)
chr5 (167-219)||(2243290-2243342)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 28 - 235
Target Start/End: Original strand, 27651345 - 27651552
Alignment:
Q  28 cagatgttgaacgaagaagataaagaacacgacattcttgagatgaaaatgataattgattataagaaaaaactctatcggtgaggtctacattaccttt 127  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  27651345 cagatgttgaacgaaggagataaagaacacgatattcttgagatgaaaatgataattgattgtaagaaaaaaccctatcggtgaggtctacattaccttt 27651444  T
Q  128 tgatgaattggggggagtttaccccttatgaaaagtttgattcaattctagatcggaggagatggatatcacatgttgaatgaaggagatgagttgtttg 227  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27651445 tgatgaattggggggagtttaccccttatgaaaagtatgattcaattctagaccggaggagatggatatcacatgttgaatgaaggagatgagttgtttg 27651544  T
Q  228 atattctt 235  Q
    || |||||    
T  27651545 atgttctt 27651552  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 219
Target Start/End: Complemental strand, 16576450 - 16576297
Alignment:
Q  65 ttgagatgaaaatgataattgattataagaaaaaactctatcggtgaggtctacattaccttttgatgaattggggggagtttaccccttatgaaaagtt 164  Q
    |||| ||||||||||||| ||||| ||||||||||||||||| ||| || |||| |||||  |||||||||| |||  | ||||||||| |||| ||||     
T  16576450 ttgaaatgaaaatgataaatgattgtaagaaaaaactctatccgtggggcctacgttaccccttgatgaatt-gggttaatttacccctaatgataagta 16576352  T
Q  165 tgattcaattctagatcggaggagatggatatcacatgttgaatgaaggagatga 219  Q
    |||||| ||||| || || | |||| ||| |||||||||||||||||||||||||    
T  16576351 tgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatga 16576297  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 219
Target Start/End: Original strand, 38576810 - 38576963
Alignment:
Q  65 ttgagatgaaaatgataattgattataagaaaaaactctatcggtgaggtctacattaccttttgatgaattggggggagtttaccccttatgaaaagtt 164  Q
    |||||||||||||| ||| ||||| |||||||||||  ||||| ||||| ||||||||||  || ||||||| |||| | ||||| ||| |||| || |     
T  38576810 ttgagatgaaaatggtaactgattgtaagaaaaaaccttatcgatgaggcctacattacccctttatgaatt-ggggtaatttactcctaatgacaaata 38576908  T
Q  165 tgattcaattctagatcggaggagatggatatcacatgttgaatgaaggagatga 219  Q
    |||||  ||| | |  || | |||||||| ||||||||||||||||| |||||||    
T  38576909 tgatttgattatggtacgaaagagatggaaatcacatgttgaatgaaagagatga 38576963  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 219
Target Start/End: Original strand, 17606621 - 17606654
Alignment:
Q  186 gagatggatatcacatgttgaatgaaggagatga 219  Q
    ||||||||||||||||||||||||||||||||||    
T  17606621 gagatggatatcacatgttgaatgaaggagatga 17606654  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 28282855 - 28282823
Alignment:
Q  67 gagatgaaaatgataattgattataagaaaaaa 99  Q
    |||||||||||||||||||||| ||||||||||    
T  28282855 gagatgaaaatgataattgattgtaagaaaaaa 28282823  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 34761991 - 34762066
Alignment:
Q  61 attcttgagatgaaaatgataattgattataagaaaaaactctatcggtgaggtctacattaccttttgatgaattg 137  Q
    ||||| ||||||||||||||||||||||  |||||||||| |||||  |||||||||||| | || |||||||||||    
T  34761991 attctcgagatgaaaatgataattgattgaaagaaaaaac-ctatcaatgaggtctacatcatctcttgatgaattg 34762066  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 219
Target Start/End: Complemental strand, 39341360 - 39341248
Alignment:
Q  107 ggtgaggtctacattaccttttgatgaattggggggagtttaccccttatgaaaagtttgattcaattctagatcggaggagatggatatcacatgttga 206  Q
    |||||||||||  ||||| ||||||||||| |||| | |||||| || |||| || |  ||||||||| |||| || || | ||||| ||| ||||||||    
T  39341360 ggtgaggtctatgttaccctttgatgaattaggggtaatttacctctaatgataaataagattcaattttagaacgaagtaaatggagatctcatgttga 39341261  T
Q  207 atgaaggagatga 219  Q
    |||||||||||||    
T  39341260 atgaaggagatga 39341248  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 101
Target Start/End: Complemental strand, 42819657 - 42819618
Alignment:
Q  62 ttcttgagatgaaaatgataattgattataagaaaaaact 101  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  42819657 ttcttgagatgaaaatgataattgattgtaagaaaaaact 42819618  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 46081007 - 46080944
Alignment:
Q  62 ttcttgagatgaaaatgataattgattataagaaaaaact-ctatcggtgaggtctacattacc 124  Q
    ||||||||||||||||| ||||||||| |||||||||| | |||||||| |||| |||||||||    
T  46081007 ttcttgagatgaaaatggtaattgattgtaagaaaaaaatcctatcggtaaggtatacattacc 46080944  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 41148571 - 41148651
Alignment:
Q  127 ttgatgaattggggggagtttaccccttatgaaaagtttgattcaattctagatcggaggagatggatatcacatgttgaat 208  Q
    ||||||||||||||  | |||| |||| |||||||||   |||| |||||||| || |||||||||||||||||||||||||    
T  41148571 ttgatgaattggggtaa-tttatccctaatgaaaagtagaattcgattctagaacgaaggagatggatatcacatgttgaat 41148651  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 24873793 - 24873737
Alignment:
Q  70 atgaaaatgataattgattataagaaaaaactctatcggtgaggtctacattacctt 126  Q
    ||||||||| ||||||||| ||||||||||| |  || |||||||||||||||||||    
T  24873793 atgaaaatggtaattgattgtaagaaaaaacccgctcagtgaggtctacattacctt 24873737  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 24874626 - 24874570
Alignment:
Q  70 atgaaaatgataattgattataagaaaaaactctatcggtgaggtctacattacctt 126  Q
    ||||||||| ||||||||| ||||||||||| |  || |||||||||||||||||||    
T  24874626 atgaaaatggtaattgattgtaagaaaaaacccgctcagtgaggtctacattacctt 24874570  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 49898022 - 49897922
Alignment:
Q  116 tacattaccttttgatgaattggggggagtttaccccttatgaaaagtttgattcaattctagatcggaggagatggatatcacatgttgaatgaaggag 215  Q
    ||||||||| |||| |||||  | || | |||||| || |||| || | |||||| |||||||| |  |||||||||| |||||||||||||||||||||    
T  49898022 tacattaccctttgttgaatcagtggtaatttacctctaatgacaattatgattcgattctagaacaaaggagatggagatcacatgttgaatgaaggag 49897923  T
Q  216 a 216  Q
    |    
T  49897922 a 49897922  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 7104555 - 7104488
Alignment:
Q  107 ggtgaggtctacattaccttttgatgaattggggggagtttaccccttatgaaaagtttgattcaatt 174  Q
    ||||||||||||||||||  |||||||||||||||  ||||| || | |||| |||| ||||||||||    
T  7104555 ggtgaggtctacattaccccttgatgaattgggggtggtttagccataatgacaagtatgattcaatt 7104488  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 95
Target Start/End: Complemental strand, 52432697 - 52432664
Alignment:
Q  62 ttcttgagatgaaaatgataattgattataagaa 95  Q
    ||||||||||||||||| ||||||||||||||||    
T  52432697 ttcttgagatgaaaatggtaattgattataagaa 52432664  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 32342633 - 32342597
Alignment:
Q  65 ttgagatgaaaatgataattgattataagaaaaaact 101  Q
    |||||||||||||||||||||||| ||||||||||||    
T  32342633 ttgagatgaaaatgataattgattgtaagaaaaaact 32342597  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 219
Target Start/End: Complemental strand, 29093618 - 29093585
Alignment:
Q  186 gagatggatatcacatgttgaatgaaggagatga 219  Q
    |||||||| |||||||||||||||||||||||||    
T  29093618 gagatggagatcacatgttgaatgaaggagatga 29093585  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 32166674 - 32166710
Alignment:
Q  62 ttcttgagatgaaaatgataattgattataagaaaaa 98  Q
    ||||||||||||||||||||||||||  |||||||||    
T  32166674 ttcttgagatgaaaatgataattgatagtaagaaaaa 32166710  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 17736796 - 17736857
Alignment:
Q  65 ttgagatgaaaatgataattgattataag-aaaaaactctatcggtgaggtctacattacct 125  Q
    |||||||||||||| |||||| || |||| |||||| |||||| |||||||||| |||||||    
T  17736796 ttgagatgaaaatggtaattggttgtaagaaaaaaattctatcagtgaggtctatattacct 17736857  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 2243290 - 2243342
Alignment:
Q  167 attcaattctagatcggaggagatggatatcacatgttgaatgaaggagatga 219  Q
    |||| |||||||| || || ||||||| |||||||||||||||||||| ||||    
T  2243290 attcgattctagaacgaagaagatggagatcacatgttgaatgaaggatatga 2243342  T

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