View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_213 (Length: 248)
Name: NF8180A_low_213
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_213 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 10619883 - 10619659
Alignment:
| Q |
13 |
tggacatcacaactgtaa----gaccatatcgattgcaaattagatctgcgcattttgctttcgtatacaggttcatagtcattgctgcattgtaacttc |
108 |
Q |
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| T |
10619883 |
tggacatcacaactgtaattgcgaccatatcgattgcaaattagatctgcgcattttgctttcgtatacaggttcatagtcattgctgcattgtaacttc |
10619784 |
T |
|
| Q |
109 |
tgatagaaggcatgtgcgttgtgacagaaaacaatgtttgacattgacccacgtgattacattaaatttattcatattttaaaatcgacgttgacttgtc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10619783 |
tgatagaaggcatgtgcgttgtgacagaaaacaatgtttgacattgacccacgtgattacattaaatttattcatattttaaaatcgacgttgacttgtc |
10619684 |
T |
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| Q |
209 |
aatattattgtcgtgtatgatgtcc |
233 |
Q |
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||| |||||||| |||||| ||||| |
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| T |
10619683 |
aatgttattgtcatgtatggtgtcc |
10619659 |
T |
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