View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_214 (Length: 248)
Name: NF8180A_low_214
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_214 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 12148288 - 12148046
Alignment:
| Q |
1 |
gacatcatagaatatcgatcaactgtatagatgggagtgtgtaatgggggctagtgatgtataactgtgagttaaaaccatctattatcatgttttatgt |
100 |
Q |
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| T |
12148288 |
gacataatagaatatcgatcaactgtatagatgggagtgtgtaatgggggctagtgatgtataactgtgagctaaaaccatctattatcatgtttaatgt |
12148189 |
T |
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| Q |
101 |
ttcttacaaatatgtgttagttgattttattagttatgtatattatacagaaaccacattgaacaaattggagaagtcatctttaatgcttgcatatgag |
200 |
Q |
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| T |
12148188 |
ttcttacaaatatgtgttagttgattttattagttatgtatattatacagaaaccacattgaacaaattggagaagtcatctttaatgcttgcatatgag |
12148089 |
T |
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| Q |
201 |
gttaatgccgtcggtcctatcttggttatcaaggtaacaccaa |
243 |
Q |
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| T |
12148088 |
gttaatgccgtcggtcctatcttggttatcaaggtaacaccaa |
12148046 |
T |
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