View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_216 (Length: 247)

Name: NF8180A_low_216
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_216
NF8180A_low_216
[»] chr3 (11 HSPs)
chr3 (15-236)||(3472912-3473132)
chr3 (18-236)||(18539220-18539439)
chr3 (103-236)||(3586037-3586170)
chr3 (18-149)||(39728849-39728979)
chr3 (15-146)||(18694761-18694891)
chr3 (15-146)||(18710280-18710410)
chr3 (141-236)||(39728206-39728300)
chr3 (109-194)||(15778350-15778435)
chr3 (20-120)||(19595713-19595813)
chr3 (66-146)||(3289496-3289575)
chr3 (190-232)||(3475798-3475840)
[»] scaffold0281 (1 HSPs)
scaffold0281 (15-236)||(561-782)
[»] chr4 (13 HSPs)
chr4 (18-236)||(11150311-11150528)
chr4 (15-236)||(15703423-15703643)
chr4 (20-232)||(25127291-25127503)
chr4 (18-237)||(23972830-23973049)
chr4 (18-237)||(14644608-14644826)
chr4 (15-234)||(4529772-4529989)
chr4 (107-232)||(19612930-19613056)
chr4 (19-146)||(18875038-18875161)
chr4 (95-152)||(20770653-20770710)
chr4 (130-223)||(12385288-12385382)
chr4 (196-233)||(9565036-9565073)
chr4 (106-146)||(15691335-15691376)
chr4 (102-146)||(9609818-9609862)
[»] chr7 (12 HSPs)
chr7 (18-236)||(11509746-11509963)
chr7 (18-236)||(18148734-18148951)
chr7 (18-232)||(22530124-22530338)
chr7 (18-235)||(34705766-34705977)
chr7 (15-194)||(21860584-21860761)
chr7 (34-139)||(13694170-13694274)
chr7 (88-183)||(3377724-3377820)
chr7 (118-194)||(21501014-21501091)
chr7 (121-177)||(6019275-6019331)
chr7 (124-172)||(13386703-13386750)
chr7 (124-172)||(19193977-19194024)
chr7 (126-177)||(21498551-21498603)
[»] chr5 (7 HSPs)
chr5 (17-237)||(39437067-39437286)
chr5 (110-183)||(29497057-29497130)
chr5 (124-172)||(27273153-27273200)
chr5 (124-171)||(19049409-19049455)
chr5 (107-138)||(32039818-32039849)
chr5 (198-236)||(29497017-29497055)
chr5 (204-236)||(889872-889904)
[»] chr8 (8 HSPs)
chr8 (18-236)||(9882232-9882450)
chr8 (9-233)||(40387489-40387712)
chr8 (112-237)||(1216744-1216869)
chr8 (63-236)||(42145381-42145554)
chr8 (107-146)||(17289632-17289671)
chr8 (18-72)||(4860588-4860638)
chr8 (15-95)||(42145299-42145378)
chr8 (210-239)||(17289761-17289790)
[»] chr1 (10 HSPs)
chr1 (18-233)||(52272638-52272852)
chr1 (62-233)||(12785022-12785199)
chr1 (107-233)||(41138001-41138127)
chr1 (107-237)||(9132516-9132647)
chr1 (107-237)||(23633267-23633398)
chr1 (35-146)||(89878-89988)
chr1 (15-112)||(18514938-18515036)
chr1 (62-146)||(18249887-18249972)
chr1 (111-162)||(19474425-19474476)
chr1 (15-54)||(18249965-18250004)
[»] chr6 (10 HSPs)
chr6 (62-236)||(19770139-19770312)
chr6 (18-236)||(19891695-19891910)
chr6 (18-237)||(9547622-9547840)
chr6 (101-236)||(22468810-22468952)
chr6 (125-194)||(12876106-12876176)
chr6 (107-146)||(19565277-19565316)
chr6 (107-146)||(20738946-20738985)
chr6 (15-69)||(22468752-22468806)
chr6 (123-160)||(17729507-17729544)
chr6 (196-236)||(19565160-19565200)
[»] scaffold0005 (1 HSPs)
scaffold0005 (18-237)||(172466-172684)
[»] scaffold0024 (1 HSPs)
scaffold0024 (19-231)||(106674-106885)
[»] scaffold0323 (1 HSPs)
scaffold0323 (100-237)||(15300-15437)
[»] chr2 (12 HSPs)
chr2 (107-237)||(16092412-16092543)
chr2 (107-233)||(20264687-20264813)
chr2 (15-146)||(32625541-32625671)
chr2 (23-137)||(34892182-34892295)
chr2 (107-194)||(38991701-38991788)
chr2 (119-233)||(27401699-27401814)
chr2 (62-139)||(20178635-20178711)
chr2 (107-194)||(22385814-22385899)
chr2 (118-175)||(30613270-30613327)
chr2 (117-160)||(29890519-29890563)
chr2 (15-85)||(16092227-16092297)
chr2 (102-177)||(19467084-19467160)
[»] scaffold0498 (2 HSPs)
scaffold0498 (18-146)||(12012-12139)
scaffold0498 (142-232)||(9784-9875)
[»] scaffold0449 (1 HSPs)
scaffold0449 (152-236)||(344-429)
[»] scaffold0009 (1 HSPs)
scaffold0009 (87-146)||(221835-221894)
[»] scaffold0043 (2 HSPs)
scaffold0043 (107-179)||(66678-66752)
scaffold0043 (17-85)||(66953-67021)
[»] scaffold0196 (1 HSPs)
scaffold0196 (118-146)||(22871-22899)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 3473132 - 3472912
Alignment:
Q  15 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 114  Q
    ||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||| |||||| |||||||| | |||||||| ||||||||    
T  3473132 acatcattgaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaattacatatcttc-aaatagacctacagttatgtatgcaatg 3473034  T
Q  115 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactg 214  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3473033 tctctaactcgactctatatgcatgttgtaccggttttggatatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactg 3472934  T
Q  215 accatgaatgcatgaacaccaa 236  Q
    ||||||||||||||||||||||    
T  3472933 accatgaatgcatgaacaccaa 3472912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 18539439 - 18539220
Alignment:
Q  18 tcattgaatatcacatctttaaa-taattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtc 116  Q
    |||||||||||| |||||||||| || ||||| |||||||| ||| ||||||||||||||||||||||| ||||| || | |||||||| ||||||||||    
T  18539439 tcattgaatatcgcatctttaaaatagttacagatcttaaagtattacatcttttaattacacatcttc-aaatatacctacagttatgtatgcaatgtc 18539341  T
Q  117 cctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactga 215  Q
     ||||||||||||||||||||||||||||||||||||||| | ||| |||| ||||||||||||| |||||||||||| ||||| |||||||||||||||    
T  18539340 tctaactcgactctatatgcatgtggtaccggttttggattttagagttatcttactgatttatctcccatctttaaatcacatatttaaatcggactga 18539241  T
Q  216 ccatgaatgcatgaacaccaa 236  Q
     ||||||||||||||||||||    
T  18539240 acatgaatgcatgaacaccaa 18539220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 3586037 - 3586170
Alignment:
Q  103 atggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctt 202  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||| ||| | ||||||||||||||||||    
T  3586037 atggatgcaatgtccctaactcgactctatatgcatgtagtaccgattttggatatcagagttatgttactgattaatctcgcatctttaaacacatctt 3586136  T
Q  203 taaatcggactgaccatgaatgcatgaacaccaa 236  Q
    ||||||||||||||||||||||||||||||||||    
T  3586137 taaatcggactgaccatgaatgcatgaacaccaa 3586170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 39728979 - 39728849
Alignment:
Q  18 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 117  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||| |||||||||||||||||||| |||||||| | || ||||| ||||||||||     
T  39728979 tcattgaatatcacatctttaaatacgtacacatcttaaaatatcacttcttttaattacacatcttc-aaatagacctacaattatgtatgcaatgtct 39728881  T
Q  118 ctaactcgactctatatgcatgtggtaccggt 149  Q
    ||||||||||||||||||||||||||||||||    
T  39728880 ctaactcgactctatatgcatgtggtaccggt 39728849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 18694891 - 18694761
Alignment:
Q  15 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 114  Q
    |||||||||||||||||||||||| ||| |||||  |||| || |  |||||||||||||||||||||||  || |||||||||||||||| ||||||||    
T  18694891 acatcattgaatatcacatctttacatatttacatgtctttaaatcacacatcttttaattacacatcttt-aagtagacttgcagttatgtatgcaatg 18694793  T
Q  115 tccctaactcgactctatatgcatgtggtacc 146  Q
    ||||||||||||||||||||||||||||||||    
T  18694792 tccctaactcgactctatatgcatgtggtacc 18694761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 18710410 - 18710280
Alignment:
Q  15 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 114  Q
    |||||||||||||||||||||||| ||| |||||  |||| || |  |||||||||||||||||||||||  || |||||||||||||||| ||||||||    
T  18710410 acatcattgaatatcacatctttacatatttacatgtctttaaatcacacatcttttaattacacatcttt-aagtagacttgcagttatgtatgcaatg 18710312  T
Q  115 tccctaactcgactctatatgcatgtggtacc 146  Q
    ||||||||||||||||||||||||||||||||    
T  18710311 tccctaactcgactctatatgcatgtggtacc 18710280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 39728300 - 39728206
Alignment:
Q  141 ggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacaccaa 236  Q
    |||||||||||||||||||||| |||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39728300 ggtaccggttttggatatcagagttatga-actggtttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacaccaa 39728206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 15778435 - 15778350
Alignment:
Q  109 gcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa 194  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||    
T  15778435 gcaatgtccctaactcgactctatatgcatgtggtactgattttggatatcagagttatgttactgatttatcccccatctttaaa 15778350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 19595713 - 19595813
Alignment:
Q  20 attgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccct 119  Q
    |||||||||| |||||||||||| ||| |||| || || ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  19595713 attgaatatcccatctttaaatagttatacatttttaaatatcacatcttttaattacacatcttcaaaatagacttgcagttatgtatgcaatgtccct 19595812  T
Q  120 a 120  Q
    |    
T  19595813 a 19595813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 146
Target Start/End: Original strand, 3289496 - 3289575
Alignment:
Q  66 tcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtacc 146  Q
    ||||| ||| |||||||||| ||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||    
T  3289496 tctttaaatcacacatcttc-aaatagacttgtagttatgtatgcaatgtctctaactcgactctatatgcatgtggtacc 3289575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 3475798 - 3475840
Alignment:
Q  190 ttaaacacatctttaaatcggactgaccatgaatgcatgaaca 232  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  3475798 ttaaacacatctttaaatcggactgaccaagaatgcatgaaca 3475840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 561 - 782
Alignment:
Q  15 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 114  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||  ||||||| |||||||| |||||||||| ||||||||    
T  561 acatcattgaatatcacatctttaaatatttacacatcttaaaatatcacatcttttaattatgcatcttc-aaatagacctgcagttatgtatgcaatg 659  T
Q  115 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggact 213  Q
    || |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  660 tctctaactcgactctatatgcatgtggtaccggttttggatatcagagatatgttactgatttatcccccatctttaaatcacatctttaaatcggact 759  T
Q  214 gaccatgaatgcatgaacaccaa 236  Q
    |||||||||||||||||||||||    
T  760 gaccatgaatgcatgaacaccaa 782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 11150311 - 11150528
Alignment:
Q  18 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 117  Q
    |||||||||||||||| ||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||     
T  11150311 tcattgaatatcacatatttaaataggtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtct 11150409  T
Q  118 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 217  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11150410 ctaactcgactctatatgcatgttgtaccggttttggatatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 11150509  T
Q  218 atgaatgcatgaacaccaa 236  Q
    |||||||||||||||||||    
T  11150510 atgaatgcatgaacaccaa 11150528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 15703423 - 15703643
Alignment:
Q  15 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 114  Q
    ||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | || ||||| ||||||||    
T  15703423 acatcattgaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacaattatgtatgcaatg 15703521  T
Q  115 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactg 214  Q
    || ||||||||||||||||| |||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15703522 tctctaactcgactctatatacatgtggtaccgattttagatatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactg 15703621  T
Q  215 accatgaatgcatgaacaccaa 236  Q
    ||||||||||||||||||||||    
T  15703622 accatgaatgcatgaacaccaa 15703643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 25127503 - 25127291
Alignment:
Q  20 attgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccct 119  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| |||||||||| ||    
T  25127503 attgaatatcacatctttaaatagttacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctct 25127405  T
Q  120 aactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgacca 218  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25127404 aactcgactcaatatgcatgtggtaccggttttggatatcagagttatgttactgatttatcccccatctttaaatcacatctttaaatcggactgacca 25127305  T
Q  219 tgaatgcatgaaca 232  Q
    ||||||||||||||    
T  25127304 tgaatgcatgaaca 25127291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 23972830 - 23973049
Alignment:
Q  18 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 117  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||| |||||||||| |||||||| | |||||||| ||||||||||     
T  23972830 tcattgaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaatcacacatcttc-aaatagacctacagttatgtatgcaatgtct 23972928  T
Q  118 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 216  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  23972929 ctaactcgactctatatgcatgtggtaccagttttggatatcagagttatgttactgaattatcccccatctttaaatcacatctttaaatcggactgac 23973028  T
Q  217 catgaatgcatgaacaccaaa 237  Q
    |||||||||||||||||||||    
T  23973029 catgaatgcatgaacaccaaa 23973049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 14644608 - 14644826
Alignment:
Q  18 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 117  Q
    ||||||| ||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||| | ||| |||||||| |  | ||||| ||| ||||||     
T  14644608 tcattgagtatcacatctttaaatagttacatatcgtaaaatatcacatcttttaattacaccttttc-aaatagacctataattatgtatgtaatgtct 14644706  T
Q  118 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 217  Q
    |||||||||||||||||||||||| || ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14644707 ctaactcgactctatatgcatgtgatatcggttttggatatcatagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 14644806  T
Q  218 atgaatgcatgaacaccaaa 237  Q
    ||||||||||||||||||||    
T  14644807 atgaatgcatgaacaccaaa 14644826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 4529772 - 4529989
Alignment:
Q  15 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 114  Q
    |||||||||||||||||||||||||||| ||||| || || || || || ||  ||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  4529772 acatcattgaatatcacatctttaaatagttacatatttttaaataacaaattatttaattacacatcttc-aaatagacttgtagttatgtatgcaatg 4529870  T
Q  115 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactg 214  Q
    || |||||||| |||||||||||||||||| |  ||||||||||||||  |||||||||||||||| ||||||||| || ||||| |||||||| |||||    
T  4529871 tctctaactcggctctatatgcatgtggtaacatttttggatatcagaggtatgttactgatttat-ccccatcttaaatcacatatttaaatcagactg 4529969  T
Q  215 accatgaatgcatgaacacc 234  Q
    |||||||||||||| |||||    
T  4529970 accatgaatgcatggacacc 4529989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 107 - 232
Target Start/End: Complemental strand, 19613056 - 19612930
Alignment:
Q  107 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaa 205  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| |||| ||||||||||| |||||||||||    
T  19613056 atgcaatgtccctaactcgactctatatgcatgtggtactggtttcggatatcagagttatgttactgattaatcctccatctttaaatcacatctttaa 19612957  T
Q  206 atcggactgaccatgaatgcatgaaca 232  Q
    |||||||||||||||||||||||||||    
T  19612956 atcggactgaccatgaatgcatgaaca 19612930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 18875038 - 18875161
Alignment:
Q  19 cattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccc 118  Q
    |||| |||||| |||||||||||| ||||||||||| ||  |  ||||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||||    
T  18875038 cattaaatatctcatctttaaatagttacacatctttaaaaagaacatcttttaattacacatattc-atatagacttgcaattatgtatgcaatgtccc 18875136  T
Q  119 taactcgactctatatgcatgtggtacc 146  Q
    |||||||| ||||||  |||||||||||    
T  18875137 taactcga-tctata--catgtggtacc 18875161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 20770653 - 20770710
Alignment:
Q  95 ttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggtttt 152  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||||||||| |||||    
T  20770653 ttgcagttatgtatgcgatgtacctaactcgactctatatgcatgtggtaccagtttt 20770710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 12385382 - 12385288
Alignment:
Q  130 tatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaat 223  Q
    |||||||||||||||    |||||||| || || | ||||||| || |||||||||||||| ||| |||||||| ||||  ||||||||||||||    
T  12385382 tatatgcatgtggtattaattttggatgtctgagtaatgttaccgagttatcccccatcttcaaatcacatcttcaaatgtgactgaccatgaat 12385288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 9565073 - 9565036
Alignment:
Q  196 acatctttaaatcggactgaccatgaatgcatgaacac 233  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  9565073 acatcgttaaataggactgaccatgaatgcatgaacac 9565036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 15691335 - 15691376
Alignment:
Q  106 gatgcaatgtcccta-actcgactctatatgcatgtggtacc 146  Q
    ||||||||||||||| |||||||| |||||||||||||||||    
T  15691335 gatgcaatgtccctacactcgactatatatgcatgtggtacc 15691376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 9609818 - 9609862
Alignment:
Q  102 tatggatgcaatgtccctaactcgactctatatgcatgtggtacc 146  Q
    |||| ||| ||||| ||||||| ||||||||||||||||||||||    
T  9609818 tatgtatggaatgtacctaacttgactctatatgcatgtggtacc 9609862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 11509963 - 11509746
Alignment:
Q  18 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 117  Q
    |||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||||||| |||||| | | |||||||| ||||||||||     
T  11509963 tcattgaatatcacatctttaaataggtacacatcttaatatatcacatcttttaattacacatcttc-aaatagtcatacagttatgtatgcaatgtct 11509865  T
Q  118 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11509864 ctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttattgatttatcccccatctttaaacacatctttaaatcggactgacc 11509765  T
Q  218 atgaatgcatgaacaccaa 236  Q
    |||||||||||||||||||    
T  11509764 atgaatgcatgaacaccaa 11509746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 18148951 - 18148734
Alignment:
Q  18 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 117  Q
    |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | || ||||| ||||||||||     
T  18148951 tcattgaatatcacatctttaaatatgtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacaattatgtatgcaatgtct 18148853  T
Q  118 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 217  Q
    |||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18148852 ctaactcgactctatatgcatgtggtaccggttttgaatatctgagttatgttactgatttatcccccatctttaaacacatctttaaatcagactgacc 18148753  T
Q  218 atgaatgcatgaacaccaa 236  Q
    |||||||||||||||||||    
T  18148752 atgaatgcatgaacaccaa 18148734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 22530338 - 22530124
Alignment:
Q  18 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 117  Q
    ||||||||||| ||||||||||||| || ||||||||||| |||||| |||||||| ||||||||||| | |||||| | || ||||| ||||||||||     
T  22530338 tcattgaatattacatctttaaatagttgcacatcttaaaatatcacgtcttttaactacacatcttc-agatagacctacaattatgtatgcaatgtct 22530240  T
Q  118 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||    
T  22530239 ctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgatttatcccacatctttaaatcacatatttaaatcggactgac 22530140  T
Q  217 catgaatgcatgaaca 232  Q
    ||||||||| ||||||    
T  22530139 catgaatgcttgaaca 22530124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 34705766 - 34705977
Alignment:
Q  18 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 117  Q
    |||| |||||||||||||||||| | ||||||| |||||| |||||||||||      |||||||||| |||||||| | |||||||| ||||||||||     
T  34705766 tcatcgaatatcacatctttaaacacttacacaacttaaaatatcacatctt------acacatcttc-aaatagacctacagttatgtatgcaatgtct 34705858  T
Q  118 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 216  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  34705859 ctaactcaactctatctgcatgtggtaccggttttggatatcagagttatgttactgattaatcctccatctttaaatcacatctttaaatcggactgac 34705958  T
Q  217 catgaatgcatgaacacca 235  Q
    |||||||||||||||||||    
T  34705959 catgaatgcatgaacacca 34705977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 21860761 - 21860584
Alignment:
Q  15 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 114  Q
    ||||||||||||||||| |||||||||| |||||||| || || ||  | |||||| |||||||||||||| ||||||||||||| ||||| ||||||||    
T  21860761 acatcattgaatatcacgtctttaaatagttacacatatttaaatagtatatctttaaattacacatcttc-aaatagacttgcaattatgtatgcaatg 21860663  T
Q  115 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa 194  Q
    |||||||||||||| |||||| ||||| |||   ||||||||||||||  ||||||||||| ||||||||||||||||||    
T  21860662 tccctaactcgactatatatgaatgtgttactaattttggatatcagatgtatgttactga-ttatcccccatctttaaa 21860584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 13694170 - 13694274
Alignment:
Q  34 ctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctata 133  Q
    |||||||||| |||||||||| || |  ||| ||||||||| |||||||||| |||||||||||||  |||| |||||||||||||||||||| ||||||    
T  13694170 ctttaaataaatacacatctttaaatgacacgtcttttaatcacacatcttc-aaatagacttgcaaatatgtatgcaatgtccctaactcgattctata 13694268  T
Q  134 tgcatg 139  Q
    ||||||    
T  13694269 tgcatg 13694274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 3377724 - 3377820
Alignment:
Q  88 aatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccgg-ttttggatatcagaattatgttactgatttatccc 183  Q
    |||| |||||||| |||| ||||||||| ||||||||||||||||| ||| | |||||||| |||||||||||| | |||| ||| ||||| |||||    
T  3377724 aatacacttgcagatatgtatgcaatgtacctaactcgactctatacgcacgcggtaccggtttttggatatcatagttatattattgattaatccc 3377820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 21501091 - 21501014
Alignment:
Q  118 ctaactcgactctatatgcatgtggtacc-ggttttggatatcagaattatgttactgatttatcccccatctttaaa 194  Q
    |||| ||||||||||||||||||||||||  ||||| ||| || || ||||||||| |||| ||||  ||||||||||    
T  21501091 ctaattcgactctatatgcatgtggtaccaagttttagatgtcggagttatgttaccgattgatccttcatctttaaa 21501014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 6019331 - 6019275
Alignment:
Q  121 actcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatt 177  Q
    |||||| |||||||||||||||||||  |||||||| || || ||||||||| ||||    
T  6019331 actcgattctatatgcatgtggtaccatttttggatgtcggagttatgttaccgatt 6019275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 13386703 - 13386750
Alignment:
Q  124 cgactctatatgcatgtggtaccggttttggatatcagaattatgttac 172  Q
    ||||| ||||||| |||||||||| |||||||||||||| |||||||||    
T  13386703 cgactttatatgcttgtggtaccg-ttttggatatcagagttatgttac 13386750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 19194024 - 19193977
Alignment:
Q  124 cgactctatatgcatgtggtaccggttttggatatcagaattatgttac 172  Q
    |||||||||| ||||||||||||  |||||||||||||| |||||||||    
T  19194024 cgactctatacgcatgtggtacca-ttttggatatcagagttatgttac 19193977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 21498551 - 21498603
Alignment:
Q  126 actctatatgcatgtggtacc-ggttttggatatcagaattatgttactgatt 177  Q
    |||||||||||| |||||||| |||||| ||| ||||| ||||||||||||||    
T  21498551 actctatatgcacgtggtaccaggttttagatgtcagagttatgttactgatt 21498603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 39437286 - 39437067
Alignment:
Q  17 atcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtc 116  Q
    |||||||||||||  ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||    
T  39437286 atcattgaatatcgtatctttaaatagttacacattttaaaatatcacatcttttaattacacatcttc-aaatagacatgcagttatgtatgcaatgtc 39437188  T
Q  117 cctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgac 216  Q
     ||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39437187 tctaactcgactttatatgcatgtggtaccggttttggatattagagttatattactgatttatcccacatctttaaacacatctttaaatcggactgac 39437088  T
Q  217 catgaatgcatgaacaccaaa 237  Q
    |||||||||||||||||||||    
T  39437087 catgaatgcatgaacaccaaa 39437067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 29497130 - 29497057
Alignment:
Q  110 caatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatccc 183  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||| ||||||||  |||||||||||||||||||    
T  29497130 caatgtcgctaactcgactatatatgcatgtggtaccagttttgtatatcagaggtatgttactgatttatccc 29497057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 27273153 - 27273200
Alignment:
Q  124 cgactctatatgcatgtggtaccggttttggatatcagaattatgttac 172  Q
    ||||||||||||||||||||||| |||||||||||| || |||||||||    
T  27273153 cgactctatatgcatgtggtacc-gttttggatatcggagttatgttac 27273200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 19049409 - 19049455
Alignment:
Q  124 cgactctatatgcatgtggtaccggttttggatatcagaattatgtta 171  Q
    ||||||||||||||||||||||| |||||||||||| || ||||||||    
T  19049409 cgactctatatgcatgtggtacc-gttttggatatcggagttatgtta 19049455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 138
Target Start/End: Original strand, 32039818 - 32039849
Alignment:
Q  107 atgcaatgtccctaactcgactctatatgcat 138  Q
    ||||||||||||||||||||||||||||||||    
T  32039818 atgcaatgtccctaactcgactctatatgcat 32039849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Complemental strand, 29497055 - 29497017
Alignment:
Q  198 atctttaaatcggactgaccatgaatgcatgaacaccaa 236  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  29497055 atctttaaattagactgaccatgaatgcatgaacaccaa 29497017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 889904 - 889872
Alignment:
Q  204 aaatcggactgaccatgaatgcatgaacaccaa 236  Q
    |||| ||||||||||||||||||||||||||||    
T  889904 aaataggactgaccatgaatgcatgaacaccaa 889872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 9882232 - 9882450
Alignment:
Q  18 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 117  Q
    ||||||||||||||||||||||| | ||| |||||||||| ||||||||| ||||||||||||||||| |||||||| | |||||||| ||||||||||     
T  9882232 tcattgaatatcacatctttaaacacttaaacatcttaaaatatcacatcatttaattacacatcttc-aaatagacctacagttatgtatgcaatgtct 9882330  T
Q  118 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  9882331 ctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgattaatcccccatctttaaatcacatctttaaatcggactgac 9882430  T
Q  217 catgaatgcatgaacaccaa 236  Q
    ||||||||||||||||||||    
T  9882431 catgaatgcatgaacaccaa 9882450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 40387489 - 40387712
Alignment:
Q  9 agatggacatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggat 108  Q
    ||||| || ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| | |||||||| ||    
T  40387489 agatgcacgtcattgaatatcacatctttaaatagttacacatcttaaattatcagatcttttaattacacatcttc-aaatagacctacagttatgtat 40387587  T
Q  109 gcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaat 207  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||    
T  40387588 gcaatgtttctaactcgactctatatgcatgtggtaccagttttggatattagagttatgttactgatttat-ccccatctttaaatcacatctttaaat 40387686  T
Q  208 cggactgaccatgaatgcatgaacac 233  Q
    |||||| |||||||||||||||||||    
T  40387687 cggacttaccatgaatgcatgaacac 40387712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 112 - 237
Target Start/End: Original strand, 1216744 - 1216869
Alignment:
Q  112 atgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcgga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||    
T  1216744 atgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatcttattgatttatcccccatctttaaacacatgtttaaatcgga 1216843  T
Q  212 ctgaccatgaatgcatgaacaccaaa 237  Q
    || |||||||||||||||||||||||    
T  1216844 ctaaccatgaatgcatgaacaccaaa 1216869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 63 - 236
Target Start/End: Original strand, 42145381 - 42145554
Alignment:
Q  63 acatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcaga 162  Q
    |||||||||||| |||||| ||| ||||||| ||| ||||||  ||||||||||||||||||||||||||||||||||||||| | |||||||||||| |    
T  42145381 acatcttttaatcacacatattc-aaatagatttgtagttatatatgcaatgtccctaactcgactctatatgcatgtggtactgattttggatatcaaa 42145479  T
Q  163 attatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaatgcatgaacaccaa 236  Q
      ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||| |||||||||||||||||    
T  42145480 ggtatgttactgatttatctcccatctttaaatcacatcattaaatcggactgaccaagaatgcatgaacaccaa 42145554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 146
Target Start/End: Original strand, 17289632 - 17289671
Alignment:
Q  107 atgcaatgtccctaactcgactctatatgcatgtggtacc 146  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17289632 atgcaatgtccctaactcgactctatatgcatgtggtacc 17289671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 4860638 - 4860588
Alignment:
Q  18 tcattgaatatcacatctttaaataattacacatcttaaattatcacatctttta 72  Q
    |||||||||||||||||||||||    ||||||||||||| ||||||||||||||    
T  4860638 tcattgaatatcacatctttaaa----tacacatcttaaaatatcacatctttta 4860588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 42145299 - 42145378
Alignment:
Q  15 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagact 95  Q
    ||||||| || |||||| |||||||||| |||||||||||  | || |||| |||||||| |||||||||| |||||||||    
T  42145299 acatcatcgagtatcacgtctttaaatatttacacatctttgaataacacaacttttaatcacacatcttc-aaatagact 42145378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 239
Target Start/End: Original strand, 17289761 - 17289790
Alignment:
Q  210 gactgaccatgaatgcatgaacaccaaact 239  Q
    ||||||||||||||||||||||||||||||    
T  17289761 gactgaccatgaatgcatgaacaccaaact 17289790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 52272638 - 52272852
Alignment:
Q  18 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 117  Q
    |||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||  ||||||| || ||||||||||     
T  52272638 tcattgaatatcgcatctttaaatatttacacatcttaaaatatcacatcttttaattacacatcttc-aaatagaactgcagttgtgtatgcaatgtct 52272736  T
Q  118 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 217  Q
    ||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  52272737 ctaactcgactctatatgcatgtggtatcggttttggatatcatagttatgttactgatttatcccacatctttaaacacatctttaaatcggactgacc 52272836  T
Q  218 atgaatgcatgaacac 233  Q
    ||||||||||||||||    
T  52272837 atgaatgcatgaacac 52272852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 62 - 233
Target Start/End: Original strand, 12785022 - 12785199
Alignment:
Q  62 cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcag 161  Q
    |||||||||||||||||||||||| |||||||| | || ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12785022 cacatcttttaattacacatcttc-aaatagacctacaattatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggttttggatatcag 12785120  T
Q  162 aa-------ttatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacac 233  Q
    |        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12785121 atatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacac 12785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 107 - 233
Target Start/End: Complemental strand, 41138127 - 41138001
Alignment:
Q  107 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaa 206  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41138127 atgcaatgtccttaacttgactctatatgcatgtggtaccagttttggatatcagagttatgttactgatttatcccccatctttaaacacatctttaaa 41138028  T
Q  207 tcggactgaccatgaatgcatgaacac 233  Q
    |||||||||||||||||||||||||||    
T  41138027 tcggactgaccatgaatgcatgaacac 41138001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 107 - 237
Target Start/End: Complemental strand, 9132647 - 9132516
Alignment:
Q  107 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||    
T  9132647 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaggtatgttactgatttatcccccatctttaaatcacatctttaa 9132548  T
Q  206 atcggactgaccatgaatgcatgaacaccaaa 237  Q
    |||||||| || ||||||||||||||||||||    
T  9132547 atcggactaactatgaatgcatgaacaccaaa 9132516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 107 - 237
Target Start/End: Complemental strand, 23633398 - 23633267
Alignment:
Q  107 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaa 205  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  23633398 atgcaatgtcactaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgatttatcccccatctttaaatcacatctttaa 23633299  T
Q  206 atcggactgaccatgaatgcatgaacaccaaa 237  Q
    |||||||||||||||||| |||||||| ||||    
T  23633298 atcggactgaccatgaattcatgaacatcaaa 23633267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 89878 - 89988
Alignment:
Q  35 tttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatat 134  Q
    ||||||||||||||  |||| || |  ||||| |||||||||||||||||| || || ||||||||| ||| ||||||||||||||||||||||||||||    
T  89878 tttaaataattacatgtctttaaatcacacatgttttaattacacatcttc-aagtaaacttgcagtaatgtatgcaatgtccctaactcgactctatat 89976  T
Q  135 gcatgtggtacc 146  Q
    |||||| |||||    
T  89977 gcatgtagtacc 89988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 18515036 - 18514938
Alignment:
Q  15 acatcattgaatatcacatctttaaataattacacatc-ttaaattat-cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaa 112  Q
    ||||||||||||||||||||||||||||||||||  || ||| ||  | || ||||||||||||||||||||| || |||||||||||||||| ||||||    
T  18515036 acatcattgaatatcacatctttaaataattacatgtctttacatcgtacatatcttttaattacacatcttc-aagtagacttgcagttatgtatgcaa 18514938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 146
Target Start/End: Complemental strand, 18249972 - 18249887
Alignment:
Q  62 cacatcttttaattacacatcttcgaaatagacttgcagt--tatggatgcaatgtccctaactcgactctatatgcatgtggtacc 146  Q
    ||||||||| ||||| |||||||  ||||||||||| |||  |||| ||| ||||||| ||||||||||||||||||||||||||||    
T  18249972 cacatctttaaattaaacatctta-aaatagacttgtagtgttatgtatgtaatgtccttaactcgactctatatgcatgtggtacc 18249887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 19474476 - 19474425
Alignment:
Q  111 aatgtccctaactcgactctatatgcatgtggtaccggttttggatatcaga 162  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  19474476 aatgtccctaacttgactctatatgcatgtggtaccgtttttgaatatcaga 19474425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 18250004 - 18249965
Alignment:
Q  15 acatcattgaatatcacatctttaaataattacacatctt 54  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  18250004 acatcaatgaatatcacatctttaaatagttacacatctt 18249965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 62 - 236
Target Start/End: Complemental strand, 19770312 - 19770139
Alignment:
Q  62 cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcag 161  Q
    |||||||||||||||||||||||| |||||||| | |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19770312 cacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggttttggatatcag 19770214  T
Q  162 aattatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacaccaa 236  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19770213 agttatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacaccaa 19770139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 19891695 - 19891910
Alignment:
Q  18 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 117  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||||||| |||||||||||||| |||||||| | || ||||| ||||||||||     
T  19891695 tcattgaatatcacatctttaaataggtacacatcttaaaatatcacatctttaaattacacatcttc-aaatagacctacacttatgtatgcaatgtct 19891793  T
Q  118 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 217  Q
    |||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||| ||||||||||||| |||||| ||||| ||||||||     
T  19891794 ctaactcgactctatatgcatgtggtaccggttttggatat--gagttatgttactgatttataccccatctttaaatacatctctaaattggactgact 19891891  T
Q  218 atgaatgcatgaacaccaa 236  Q
    | |||||||||||||||||    
T  19891892 acgaatgcatgaacaccaa 19891910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 9547622 - 9547840
Alignment:
Q  18 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 117  Q
    ||||||||||||||||||||||||| | ||||||||| ||  |||||||||| ||||||||||||||| |||||||| | |||||||| ||||||||||     
T  9547622 tcattgaatatcacatctttaaatagtcacacatcttgaaacatcacatcttataattacacatcttc-aaatagacctacagttatgtatgcaatgtct 9547720  T
Q  118 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 216  Q
    |||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  9547721 ctaactcgactctacatgcatgtggtaccggttttggatatcaaagttatgttactgatttat-ccccatctttaaatcacatctttaaatcgaactgac 9547819  T
Q  217 catgaatgcatgaacaccaaa 237  Q
    |||| ||||||| ||| ||||    
T  9547820 catgcatgcatgtacatcaaa 9547840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 236
Target Start/End: Original strand, 22468810 - 22468952
Alignment:
Q  101 ttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa------ 194  Q
    ||||| ||||||||| |||||||||||||||||||||||| ||||   ||||||||||||||  | |||||||||||||| |||||||||||||          
T  22468810 ttatgtatgcaatgttcctaactcgactctatatgcatgtagtacatattttggatatcagaggtgtgttactgatttat-ccccatctttaaatcttaa 22468908  T
Q  195 --cacatctttaaatcggactgaccatgaatgcatgaacaccaa 236  Q
       |||||||||||||||| ||||||||||||||||||||||||    
T  22468909 attacatctttaaatcggattgaccatgaatgcatgaacaccaa 22468952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 12876176 - 12876106
Alignment:
Q  125 gactctatatgcatgtggtaccg-gttttggatatcagaattatgttactgatttatcccccatctttaaa 194  Q
    ||||||||||| ||||||||||  ||||||||| ||||| ||||||||| || | ||||||||||||||||    
T  12876176 gactctatatgtatgtggtaccatgttttggatgtcagagttatgttaccgagtaatcccccatctttaaa 12876106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 19565316 - 19565277
Alignment:
Q  107 atgcaatgtccctaactcgactctatatgcatgtggtacc 146  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  19565316 atgcaatgtctctaactcgaatctatatgcatgtggtacc 19565277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 20738985 - 20738946
Alignment:
Q  107 atgcaatgtccctaactcgactctatatgcatgtggtacc 146  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  20738985 atgcaatgtgcctaactcggctctatatgcatgtggtacc 20738946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 22468752 - 22468806
Alignment:
Q  15 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatctt 69  Q
    ||||||||||||| |||||||| ||||| ||||||||||| || || ||||||||    
T  22468752 acatcattgaataacacatcttaaaatagttacacatctttaaataacacatctt 22468806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 17729507 - 17729544
Alignment:
Q  123 tcgactctatatgcatgtggtaccggttttggatatca 160  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  17729507 tcgactatatatgcatgtggtaccgtttttggatatca 17729544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 19565200 - 19565160
Alignment:
Q  196 acatctttaaatcggactgaccatgaatgcatgaacaccaa 236  Q
    ||||| |||||| ||||||| ||||||||||||||||||||    
T  19565200 acatcgttaaataggactgagcatgaatgcatgaacaccaa 19565160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 172684 - 172466
Alignment:
Q  18 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 117  Q
    ||||||| ||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||| | ||| |||||||| |  | ||||| ||| ||||||     
T  172684 tcattgagtatcacatctttaaatagttacatatcgtaaaatatcacatcttttaattacaccttttc-aaatagacctataattatgtatgtaatgtct 172586  T
Q  118 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 217  Q
    |||||||||||||||||||||||| || ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  172585 ctaactcgactctatatgcatgtgatatcggttttggatatcatagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 172486  T
Q  218 atgaatgcatgaacaccaaa 237  Q
    ||||||||||||||||||||    
T  172485 atgaatgcatgaacaccaaa 172466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 106674 - 106885
Alignment:
Q  19 cattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccc 118  Q
    |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| |||||||||| |    
T  106674 cattgaatatcacatcttaaaataattacacttcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctc 106772  T
Q  119 taactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgacc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||| |||||||| |||||||||||||| | |||||     
T  106773 taactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgatttat-tcccgtctttaaatcacatctttaaatcagtctgact 106871  T
Q  218 atgaatgcatgaac 231  Q
    ||||||||||||||    
T  106872 atgaatgcatgaac 106885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 100 - 237
Target Start/End: Original strand, 15300 - 15437
Alignment:
Q  100 gttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacat 199  Q
    |||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15300 gttatgtaagcaatgtctctaactcgactctatatgcatgtagtaccggttttggatatcagagttatgttactgatttatcccccatctttaaacacat 15399  T
Q  200 ctttaaatcggactgaccatgaatgcatgaacaccaaa 237  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  15400 ctttaaatcggactgaccatgaatgcatgaacatcaaa 15437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 107 - 237
Target Start/End: Original strand, 16092412 - 16092543
Alignment:
Q  107 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaa 205  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  16092412 atgcaatgtccctaactcgactatatatgtatgtggtaccggttttgaatatcagagttatgttactgatttatcccccatctttaaatcacatctttaa 16092511  T
Q  206 atcggactgaccatgaatgcatgaacaccaaa 237  Q
    |||||||||| |||||||||||||||||||||    
T  16092512 atcggactgatcatgaatgcatgaacaccaaa 16092543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 107 - 233
Target Start/End: Complemental strand, 20264813 - 20264687
Alignment:
Q  107 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaa 206  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| | |||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  20264813 atgcaatgtccctaactcgactctatatgcatgtggtacttgttttgaacatcagagttatgttactgatttatcccccagctttaaacacatctttaaa 20264714  T
Q  207 tcggactgaccatgaatgcatgaacac 233  Q
    |||||||||||||||||||||||||||    
T  20264713 tcggactgaccatgaatgcatgaacac 20264687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 32625671 - 32625541
Alignment:
Q  15 acatcattgaatatcacatctttaaataattacacatctt-aaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaat 113  Q
    |||| |||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||    
T  32625671 acataattgaatatcacatctttaaataattacacgtctttaaatta-cacatcttttaattacacatcttc-aagtagacttgcagttatgtatgcaat 32625574  T
Q  114 gtccctaactcgactctatatgcatgtggtacc 146  Q
    |||||||||||||||||||||||||||||||||    
T  32625573 gtccctaactcgactctatatgcatgtggtacc 32625541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 34892182 - 34892295
Alignment:
Q  23 gaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaac 122  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| |||||||||| |||||    
T  34892182 gaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctctaac 34892280  T
Q  123 tcgactctatatgca 137  Q
    |||||||||||||||    
T  34892281 tcgactctatatgca 34892295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 107 - 194
Target Start/End: Original strand, 38991701 - 38991788
Alignment:
Q  107 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||    
T  38991701 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaggtatgttactgatttatcctccatctttaaa 38991788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 27401814 - 27401699
Alignment:
Q  119 taactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgacc 217  Q
    |||||||||||||||||| |||| ||||| ||||||||||||||  |||| | ||||| ||| ||||||||||||| ||||||||||||||||||||| |    
T  27401814 taactcgactctatatgcttgtgataccgattttggatatcagaggtatgctcctgatgtattccccatctttaaatcacatctttaaatcggactgatc 27401715  T
Q  218 atgaatgcatgaacac 233  Q
    |||||| |||||||||    
T  27401714 atgaatacatgaacac 27401699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 20178635 - 20178711
Alignment:
Q  62 cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatg 139  Q
    ||||||||||||| |||||||||| |||| ||| |||| ||||| |||||||||||||||||||||||||||||||||    
T  20178635 cacatcttttaatcacacatcttc-aaattgacatgcaattatgtatgcaatgtccctaactcgactctatatgcatg 20178711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 194
Target Start/End: Original strand, 22385814 - 22385899
Alignment:
Q  107 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa 194  Q
    |||||||||  | ||||||||||||||  |||||| |||||||| |||||||||||  |||||||||||||||||| |||||||||||    
T  22385814 atgcaatgtttcaaactcgactctata--catgtgataccggttatggatatcagaggtatgttactgatttatcctccatctttaaa 22385899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 30613327 - 30613270
Alignment:
Q  118 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactga 175  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||  |||||| ||||    
T  30613327 ctaactcgactttatatgcatgtggtaccttttttggatatcagaggtatgtttctga 30613270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 29890519 - 29890563
Alignment:
Q  117 cctaactcgactctatatgcatgtggtacc-ggttttggatatca 160  Q
    |||||||||||||||||||||||||||||| |||||| |||||||    
T  29890519 cctaactcgactctatatgcatgtggtaccaggttttagatatca 29890563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 16092227 - 16092297
Alignment:
Q  15 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttc 85  Q
    |||||||| ||||||||||||| ||||| |||||| | || || || ||||||| |||||| |||||||||    
T  16092227 acatcattaaatatcacatcttaaaatagttacactttttcaaataacacatctattaattccacatcttc 16092297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 19467160 - 19467084
Alignment:
Q  102 tatggatgcaatgtccctaactcgactctatatgcatgtggtacc-ggttttggatatcagaattatgttactgatt 177  Q
    |||| ||||||||| |||||||| ||| || ||||||||||||||   ||||||||||||||  |||| ||||||||    
T  19467160 tatgtatgcaatgtacctaactcaactgtacatgcatgtggtaccaatttttggatatcagaggtatggtactgatt 19467084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 12012 - 12139
Alignment:
Q  18 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 117  Q
    |||||||||  |||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||     
T  12012 tcattgaatgacacatccttaaatagttacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtct 12110  T
Q  118 ctaactcgactctatatgcatgtggtacc 146  Q
    |||||||||||||||||||||||||||||    
T  12111 ctaactcgactctatatgcatgtggtacc 12139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 9784 - 9875
Alignment:
Q  142 gtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaatgcatgaaca 232  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||| || ||||||| ||||||| |||||||||||||||||||    
T  9784 gtaccggttttgaatatcagagttatgttactgatttatcccccatctttaaatcatatctttagatcggaccgaccatgaatgcatgaaca 9875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 429 - 344
Alignment:
Q  152 tggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaatgcatgaacaccaa 236  Q
    ||||||||| | ||||||||||||||||||| ||||||||||| |||||||||||||  |||||||||||||||||| || |||||    
T  429 tggatatcaaagttatgttactgatttatcctccatctttaaatcacatctttaaatatgactgaccatgaatgcattaaaaccaa 344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 221835 - 221894
Alignment:
Q  87 aaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtacc 146  Q
    ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  221835 aaatatacttgcagttatgtatgcaatgtcactaactcgactctatatgcatgtggtacc 221894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 66752 - 66678
Alignment:
Q  107 atgcaatgtccctaactcgactctatatg--catgtggtaccggttttggatatcagaattatgttactgattta 179  Q
    |||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||  ||||||  |||||||    
T  66752 atgcaatgtccctaactcgactctatatgcacatgtcgtaccggttttggatatcagaggtatgttgttgattta 66678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 67021 - 66953
Alignment:
Q  17 atcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttc 85  Q
    |||||||||||||||||||| ||||| |||||  |||| || || |||||| |||||||| ||| ||||    
T  67021 atcattgaatatcacatcttaaaatagttacatttctttaaataacacatcctttaattaaacagcttc 66953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 146
Target Start/End: Original strand, 22871 - 22899
Alignment:
Q  118 ctaactcgactctatatgcatgtggtacc 146  Q
    |||||||||||||||||||||||||||||    
T  22871 ctaactcgactctatatgcatgtggtacc 22899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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