View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_217 (Length: 247)
Name: NF8180A_low_217
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_217 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 44535079 - 44535310
Alignment:
| Q |
15 |
aagaatatagaggaaaaggttactaccaacatgagggagaagatgagaaactcatcaacttcattatcatatgatcataatgaggtaaagaaagttgagg |
114 |
Q |
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| T |
44535079 |
aagaaaatagaggaaaaggttactaccaacatgagggagaagatgagaaactcatcaacttcattatcatatgatcataatgaggtaaagaaagttgagg |
44535178 |
T |
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| Q |
115 |
actcctttgaaacaaataagaagctagagaggaagactacagaagacatcaatgccagtgctgatgccttcatcaagaatttcaggaaacaactcgtgat |
214 |
Q |
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| T |
44535179 |
actcctttgaaacaaataagaagctagagaggaagactacagaagacatcaatgccagtgctgatgccttcatcaagaatttcaggaaacaactcgtgat |
44535278 |
T |
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| Q |
215 |
tcaaaggcttcaatccattgagaattaagaga |
246 |
Q |
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| T |
44535279 |
tcaaaggcttcaatccattgagaattatgaga |
44535310 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 2579963 - 2579872
Alignment:
| Q |
155 |
agaagacatcaatgccagtgctgatgccttcatcaagaatttcaggaaacaactcgtgattcaaaggcttcaatccattgagaattaagaga |
246 |
Q |
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| T |
2579963 |
agaagatatcaatgctagtgctgatgccttcattaagaactttaggcagcagcttatgcttcagaggcttcaatctattgagaattatgaga |
2579872 |
T |
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