View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_218 (Length: 247)
Name: NF8180A_low_218
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_218 |
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Alignment Details
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 6703330 - 6703402
Alignment:
| Q |
162 |
gttattcatcattatggtcgattttctaggacattttatcaagaatattatgatagagtacctagtgttatat |
234 |
Q |
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| T |
6703330 |
gttattcatcattatagtcgattttctaggacattttatcaagaatattatgatagagtacctagtgttatat |
6703402 |
T |
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Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 6703178 - 6703239
Alignment:
| Q |
11 |
atggacatcagaatttgtgtttatgccattgatcatattaatttggtatgatattcttccaa |
72 |
Q |
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| T |
6703178 |
atggacatcagaatttgtgtttatgccattgatcatattaatttggtatgatattcttccaa |
6703239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 8731061 - 8731101
Alignment:
| Q |
184 |
tttctaggacattttatcaagaatattatgatagagtacct |
224 |
Q |
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| T |
8731061 |
tttctaggaaattttatcaagaatatcttgatagagtacct |
8731101 |
T |
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