View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_22 (Length: 433)
Name: NF8180A_low_22
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_22 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 51978932 - 51979361
Alignment:
| Q |
1 |
ttattctgttctaatagcactacggtggtatggttatatgttgtctttttatcctgtctatgtgattaaattcgtctgttctacggatacaataattttc |
100 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||| |
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| T |
51978932 |
ttattctgttctaatcgcactacggtggtatggttagatgttgtctttttatcctgtctatgtgattaaactcatctgttctacggatacaagaattttc |
51979031 |
T |
|
| Q |
101 |
aatgagaaatcttaattaaaaggaatgatgctctatgaaatttaagcatttctatatttggatgtcttcacatccaaataggttaatgttgtgagnnnnn |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| |
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| T |
51979032 |
aatgagaattcttaattaaaaggaatgatgctctatgaaatttaagcatttctatatttggatgtcttcagtt---aataagttaatgttgtgagttttt |
51979128 |
T |
|
| Q |
201 |
nnncttcttctagacaattgttttcacatgatgattactacatattcaggagatcaattttgtgtgtgcagatctacaatgctccgatcaatgaatgtca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51979129 |
tttcttcttctagacaattgttttcacatgatgattactacatattcaggagatcaattttgtgtgtgcagatctacaatgctccgatcaatgaatgtca |
51979228 |
T |
|
| Q |
301 |
agcaaagcttgtatttaaacctttgacacctgaatggaaatggaagttaatttatgagcccattcagcatgatgttcgcattctctcaaaaaagatccca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51979229 |
agcaaagcttgtatttaaacctttgacacctgaatggaaatggaagttaatttatgagcccattcagcatgatgttcgcattctctcaaaaaagatccca |
51979328 |
T |
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| Q |
401 |
attaccagatttgtgaatcttcaggtttgatga |
433 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
51979329 |
attaccagatttgtgaatcttcaggtttgatga |
51979361 |
T |
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