View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_223 (Length: 246)

Name: NF8180A_low_223
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_223
NF8180A_low_223
[»] chr3 (1 HSPs)
chr3 (18-246)||(53735746-53735974)
[»] chr2 (5 HSPs)
chr2 (20-99)||(40145522-40145601)
chr2 (18-79)||(12140600-12140661)
chr2 (18-73)||(4350758-4350813)
chr2 (21-68)||(38077025-38077072)
chr2 (17-83)||(32848978-32849044)
[»] chr7 (3 HSPs)
chr7 (18-67)||(36537976-36538025)
chr7 (19-81)||(22387835-22387897)
chr7 (18-67)||(23214923-23214972)
[»] chr5 (4 HSPs)
chr5 (18-79)||(11095436-11095497)
chr5 (20-81)||(14599311-14599372)
chr5 (20-54)||(40864717-40864751)
chr5 (25-61)||(18875439-18875475)
[»] chr4 (3 HSPs)
chr4 (18-81)||(2996641-2996704)
chr4 (18-79)||(18628494-18628555)
chr4 (44-88)||(8469041-8469085)


Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 53735974 - 53735746
Alignment:
Q  18 tcataagttgtttcaataagttctctcaaacaatctcattagtgtttatgtcagtaaataagttaatccaaacagtccctaaatccgactaattaaaaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53735974 tcataagttgtttcaataagttctctcaaacaatctcattagtgtttatgtcagtaaataagttaatccaaacagaccctaaatccgactaattaaaaga 53735875  T
Q  118 acaaagcagagcattaacaattcaaccaacgaatgatgtgaaagcaatagcgaacctggacatagagaatgtcctgtgcttgaagaccagtgttatggaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53735874 acaaagcagagcattaacaattcaaccaacgaatgatgtgaaagcaatagcgaacctggacatagagaatgtcctgtgcttgaagaccagtgttatggaa 53735775  T
Q  218 gtaaaagtacttattggctcttctaaaag 246  Q
    |||||||||||||||||||||||||||||    
T  53735774 gtaaaagtacttattggctcttctaaaag 53735746  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 40145522 - 40145601
Alignment:
Q  20 ataagttgtttcaataagttctctcaaacaatctcattagtgtttatgtcagtaaataagttaatccaaacagtccctaa 99  Q
    |||||||||||| |||||||||||||||||| ||||| |||||||||||||||| |||||| |||||||| || ||||||    
T  40145522 ataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataagtcaatccaaagagaccctaa 40145601  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 12140600 - 12140661
Alignment:
Q  18 tcataagttgtttcaataagttctctcaaacaatctcattagtgtttatgtcagtaaataag 79  Q
    |||||||||||||  |||||||||||||||| || || | |||||||||||||||| |||||    
T  12140600 tcataagttgttttcataagttctctcaaactatttcgtaagtgtttatgtcagtagataag 12140661  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 4350758 - 4350813
Alignment:
Q  18 tcataagttgtttcaataagttctctcaaacaatctcattagtgtttatgtcagta 73  Q
    ||||||| |||||  |||||||||||||||||||||| | |||| |||||||||||    
T  4350758 tcataagctgttttcataagttctctcaaacaatctcttaagtgcttatgtcagta 4350813  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 38077072 - 38077025
Alignment:
Q  21 taagttgtttcaataagttctctcaaacaatctcattagtgtttatgt 68  Q
    |||||||||| || |||||||||||||||||||||  |||||||||||    
T  38077072 taagttgttttaagaagttctctcaaacaatctcacaagtgtttatgt 38077025  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 32848978 - 32849044
Alignment:
Q  17 atcataagttgtttcaataagttctctcaaacaatctcattagtgtttatgtcagtaaataagttaa 83  Q
    |||||||  |||||||||||||||||||||||  |||||  |||| |||||||  ||||||||||||    
T  32848978 atcataacatgtttcaataagttctctcaaaccgtctcacaagtgattatgtcgataaataagttaa 32849044  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 36537976 - 36538025
Alignment:
Q  18 tcataagttgtttcaataagttctctcaaacaatctcattagtgtttatg 67  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||||||    
T  36537976 tcataagttgtttccataagttctctcaaacaatctcacaagtgtttatg 36538025  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 22387897 - 22387835
Alignment:
Q  19 cataagttgtttcaataagttctctcaaacaatctcattagtgtttatgtcagtaaataagtt 81  Q
    ||||||||||||  ||||| |||| |||||| |||||   |||||||||||||||||||||||    
T  22387897 cataagttgttttcataagctctcccaaacagtctcacacgtgtttatgtcagtaaataagtt 22387835  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 23214923 - 23214972
Alignment:
Q  18 tcataagttgtttcaataagttctctcaaacaatctcattagtgtttatg 67  Q
    |||||||||||||  |||| |||||||||||| |||||| ||||||||||    
T  23214923 tcataagttgttttcataaattctctcaaacagtctcataagtgtttatg 23214972  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 11095497 - 11095436
Alignment:
Q  18 tcataagttgtttcaataagttctctcaaacaatctcattagtgtttatgtcagtaaataag 79  Q
    ||||||| |||||| | ||||||||||||||||| |||  |||||||||||||||| |||||    
T  11095497 tcataagctgtttccacaagttctctcaaacaatatcacaagtgtttatgtcagtagataag 11095436  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 14599372 - 14599311
Alignment:
Q  20 ataagttgtttcaataagttctctcaaacaatctcattagtgtttatgtcagtaaataagtt 81  Q
    |||||||||||| ||||| ||||||||||||||| |  ||||||||||  ||||||||||||    
T  14599372 ataagttgtttcgataagctctctcaaacaatcttacaagtgtttatgctagtaaataagtt 14599311  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 40864717 - 40864751
Alignment:
Q  20 ataagttgtttcaataagttctctcaaacaatctc 54  Q
    |||||||||||||||||||||||||||||| ||||    
T  40864717 ataagttgtttcaataagttctctcaaacagtctc 40864751  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 18875439 - 18875475
Alignment:
Q  25 ttgtttcaataagttctctcaaacaatctcattagtg 61  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  18875439 ttgtttcaataagttctctcaaacattctcataagtg 18875475  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 2996641 - 2996704
Alignment:
Q  18 tcataagttgtttcaataagttctctcaaacaatctcattagtgtttatgtcagtaaataagtt 81  Q
    |||||||||||||  ||||| ||||||||||| |||||  |||| |||||||| ||||||||||    
T  2996641 tcataagttgttttcataagctctctcaaacagtctcaaaagtgcttatgtcaataaataagtt 2996704  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 18628555 - 18628494
Alignment:
Q  18 tcataagttgtttcaataagttctctcaaacaatctcattagtgtttatgtcagtaaataag 79  Q
    |||||||||||||  ||||| |||| |||||| |||||  |||||||||||||||| |||||    
T  18628555 tcataagttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagtagataag 18628494  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 8469041 - 8469085
Alignment:
Q  44 caaacaatctcattagtgtttatgtcagtaaataagttaatccaa 88  Q
    ||||||||||||||||||||||| || ||| |||||| |||||||    
T  8469041 caaacaatctcattagtgtttatctccgtagataagtcaatccaa 8469085  T

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