View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_232 (Length: 244)
Name: NF8180A_low_232
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_232 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 25825116 - 25824909
Alignment:
| Q |
17 |
acatcacaatggttggttttttagtgttttgtgatttatgatagctatttggtttgcatcaggttgggagttgtactgttgcgaaatgtttgtctgctgg |
116 |
Q |
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| T |
25825116 |
acatgacaagggttggttttttagtgttttgtgatttatgatagctatttggtttgcattaggttgggagttgtactgttgcgaaatgtttgtctgctgg |
25825017 |
T |
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| Q |
117 |
gaaatgtgaagggcatccggccaaacgcatgaagaaggagtgattcgttttatctttggctttctttttgaggatccgccactgtattttacaaagtaat |
216 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
25825016 |
gaaatgtgaagggcatccggccaaacgcaagaagaatgagtgattcattttatctttggctttctttttgaggat-tgccactgtattttgcaaagtaat |
25824918 |
T |
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| Q |
217 |
ttggtctat |
225 |
Q |
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||||||||| |
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| T |
25824917 |
ttggtctat |
25824909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 12079176 - 12078990
Alignment:
| Q |
28 |
gttggttttttagtgttttgtgatttatgatagctatttggtttgcatcaggttgggagttgtactgttgcgaaatgtttgtctgctgggaaatgtgaag |
127 |
Q |
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| T |
12079176 |
gttggtttgttggagttttgtaatttatgatagctatttggtttgtatcaggttggaagttgtggtgttgcgaattgtttgtctgttgggaaatgtgaat |
12079077 |
T |
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| Q |
128 |
ggcatccggccaaacgcatgaagaaggagtgattcgttttatctttggctttctttttgaggatccgccactgtattttacaaagta |
214 |
Q |
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| T |
12079076 |
gtcatccagccaaacgcatgaagaaggagtggtccgttttatgtttggctttctttttgaagaattgccactgtatttagcaaagta |
12078990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 27 - 214
Target Start/End: Complemental strand, 32443342 - 32443154
Alignment:
| Q |
27 |
ggttggttttttagtgttttgtgatttatgatagctatttggtttgc-atcaggttgggagttgtactgttgcgaaatgtttgtctgctgggaaatgtga |
125 |
Q |
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||||||||| || | ||||||| ||||||||| |||||||||| || |||||||||| || ||| ||||||||| ||||||||||||||||||||| | |
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| T |
32443342 |
ggttggtttgttggagttttgtaatttatgatggctatttggtatgttatcaggttggaagctgtggtgttgcgaattgtttgtctgctgggaaatgtaa |
32443243 |
T |
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| Q |
126 |
agggcatccggccaaacgcatgaagaaggagtgattcgttttatctttggctttctttttgaggatccgccactgtattttacaaagta |
214 |
Q |
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| T |
32443242 |
atgtcatccagccaaacgcatgaagaaggagtgatccgttttatgtttggctttctttttgaagaattgccactgtattttgcaaagta |
32443154 |
T |
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