View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_239 (Length: 243)
Name: NF8180A_low_239
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_239 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 96 - 242
Target Start/End: Original strand, 6915068 - 6915214
Alignment:
| Q |
96 |
taatatgatatgataaacaatgtgtttcaattttaattattaatatgttatatagcaaaaatagttagctatcaacaatgtgttaatctaaaagaataaa |
195 |
Q |
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| T |
6915068 |
taatatgatatgataaacaatgtgtttaaattttaattattaatatgttatatagcaaaaatagttagctatcaacaatgtgttaatctaaaagaataaa |
6915167 |
T |
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| Q |
196 |
acagtaaataacatattgttatagggtgcaccttgttataatatttg |
242 |
Q |
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| T |
6915168 |
acagtaaataacatattgttatagggtgcaccttgttatattatttg |
6915214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 6913684 - 6913767
Alignment:
| Q |
1 |
agacggtgaatttttgaatatattattttatctgttttttacatacgtgaactggagtccaaatttctgtacgttgttcatttt |
84 |
Q |
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| T |
6913684 |
agacggtgaatttttgaatatattattttatctgttttttacatatgtgaactggagtccaaatttctttacgttgttcatttt |
6913767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 45288536 - 45288585
Alignment:
| Q |
193 |
aaaacagtaaataacatattgttatagggtgcaccttgttataatatttg |
242 |
Q |
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| T |
45288536 |
aaaacagtgaataacatattgttattgggtgcaccttgttatagtatttg |
45288585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 12630726 - 12630775
Alignment:
| Q |
193 |
aaaacagtaaataacatattgttatagggtgcaccttgttataatatttg |
242 |
Q |
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| T |
12630726 |
aaaacagtgaataacatattgttattgggtgcaccttgttatagtatttg |
12630775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 31608251 - 31608202
Alignment:
| Q |
193 |
aaaacagtaaataacatattgttatagggtgcaccttgttataatatttg |
242 |
Q |
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| T |
31608251 |
aaaaaagtgaataacatattgttattgggtgcaccttgttatagtatttg |
31608202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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