View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_24 (Length: 429)
Name: NF8180A_low_24
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_24 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 9 - 429
Target Start/End: Original strand, 35655399 - 35655819
Alignment:
| Q |
9 |
gattattcttcaaaaggatactgaatcacaaatagagtagttcagcaaatatgaaggtttaataaaaaatacaagggatatcatgatcctcatttctgtt |
108 |
Q |
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| T |
35655399 |
gattattcttcaaaaggatactgaatcacaaatagagtagttcagcaaatatgaaggtttaataaaaaataaaagggatatcatgaccctcatttctgtt |
35655498 |
T |
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| Q |
109 |
acaagttatcttcaattttactaatgcttcgacatcttaacggctaacaataattggttcttgctcccttaactcactgtcaatgttatcagacataata |
208 |
Q |
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| T |
35655499 |
acaagttatcttcaattttactaatgcttcgacatcttaacggctaacaataattggttcttgctcccttaactcactgtcaatggtatcagacataata |
35655598 |
T |
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| Q |
209 |
tattagttaaacatataaaggactgtctacataccatagtaaaaaggacagatatcaaatatgacctactagatcaccgatattaggtgagtataatgtc |
308 |
Q |
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| T |
35655599 |
tattagttaaacatataaaggactgtctatataccatagtaaaaaggacagatatcaaatatgacctactagatcaccgatattaggtgagtataatttc |
35655698 |
T |
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| Q |
309 |
tctgaaacttgtaattgtttcaacnnnnnnntcgtgtcaaagacccgtattataaaacttacaaaaacctatagatatcatatataaacattccatttat |
408 |
Q |
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| T |
35655699 |
tctgaaacttgtaattgtttcaacaaaaaaatcgtgtcaaagacccgtattataaaacttacaaaaacctatagatatcatatataaacattccatttat |
35655798 |
T |
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| Q |
409 |
gaaacaaattccacattatga |
429 |
Q |
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| T |
35655799 |
gaaacaaattccacattatga |
35655819 |
T |
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