View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_243 (Length: 243)
Name: NF8180A_low_243
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_243 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 107465 - 107264
Alignment:
| Q |
16 |
atcaggagttcgaggcttttcattgtacgcaacagcagcagcagaagaggttaagacaacacgtttgagtaatggcgatttggcacatgatttgagaaca |
115 |
Q |
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| T |
107465 |
atcaggagttcgaggcttttcattgtacgcaacagcagcagcagaagaggttaagacaacacgtttgagtaatggcgatttggcacatgatttgagaaca |
107366 |
T |
|
| Q |
116 |
ttgagagtcccgttgagtgcaggatcaatcaactcagcctgagggtctttgacatcatgatagaagggagatgcagtgtgaaacacaccatgacagcctt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
107365 |
ttgagagtcccgttgagtgcaggatcaatcaactcagcctgagggtctttgacatgatgatagaagggagatgcagtgtgaaacacaccatgacagcctt |
107266 |
T |
|
| Q |
216 |
ga |
217 |
Q |
| |
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|| |
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|
| T |
107265 |
ga |
107264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 88101 - 87894
Alignment:
| Q |
16 |
atcaggagttcgaggcttttcattgtacgcaacagcagcagcagaagaggttaagacaacacgtttgagtaatggcgatttggcacatgatttgagaaca |
115 |
Q |
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| T |
88101 |
atcaggagttcgaggcttcccattataagcaacagcagcaatagaagaagttaaaacaacacgtttgagtgatggggatttagcacatgagttgagaaca |
88002 |
T |
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| Q |
116 |
ttgagagtcccgttgagtgcaggatcaatcaactcagcctgagggtctttgacatcatgatagaagggagatgcagtgtgaaacacaccatgacagcctt |
215 |
Q |
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| T |
88001 |
ttgagagtccctttgagagcaggatcaatcaattcagcctgaggatccttgacatcatgataaaagggagatgcagtgtgaaagacaccatgacagcctt |
87902 |
T |
|
| Q |
216 |
gaccaaca |
223 |
Q |
| |
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|| ||||| |
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| T |
87901 |
gaacaaca |
87894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 2707155 - 2707050
Alignment:
| Q |
21 |
gagttcgaggcttttcattgtacgcaacagcagcagcagaagaggttaagacaacacgtttgagtaatggcgatttggcacatgatttgagaacattgag |
120 |
Q |
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||||| ||||||||| |||||||||||| ||||| |||||||||||| ||||||||||| || |||| |||| ||||||||||| || ||||| || |
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| T |
2707155 |
gagtttgaggctttttattgtacgcaaccgcagcgatagaagaggttaatacaacacgtttcagagatggaaattttgcacatgatttcagcacatttag |
2707056 |
T |
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| Q |
121 |
agtccc |
126 |
Q |
| |
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|||||| |
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| T |
2707055 |
agtccc |
2707050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 44784761 - 44784893
Alignment:
| Q |
16 |
atcaggagttcgaggcttttcattgtacgcaacagcagcagcagaagaggttaagacaacacgtttgagtaatggcgatttggcacatgatttgagaaca |
115 |
Q |
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||||||||||||||||||| ||||||| ||||||||||| ||||||| ||||||||||||||||||||| |||| ||||| |||||||| ||||||||| |
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| T |
44784761 |
atcaggagttcgaggctttccattgtatgcaacagcagcgacagaagatgttaagacaacacgtttgagtgatggggattttgcacatgagttgagaaca |
44784860 |
T |
|
| Q |
116 |
ttgagagtcccgttgagtgcaggatcaatcaac |
148 |
Q |
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||||||||||| ||||| ||||||||||||||| |
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| T |
44784861 |
ttgagagtccctttgagcgcaggatcaatcaac |
44784893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 25934307 - 25934237
Alignment:
| Q |
87 |
atggcgatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaactcagcctga |
157 |
Q |
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|||| ||||| |||||||||| |||||||| ||||| || || ||||| ||||||||||||||||||||| |
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| T |
25934307 |
atggtgattttgcacatgattgaagaacattaagagttcccttcagtgccggatcaatcaactcagcctga |
25934237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 26101933 - 26101881
Alignment:
| Q |
98 |
gcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaactc |
150 |
Q |
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||||||||||| |||||||| ||||| || || ||||| |||||||||||||| |
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| T |
26101933 |
gcacatgatttaagaacattaagagttcccttaagtgccggatcaatcaactc |
26101881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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