View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_249 (Length: 241)

Name: NF8180A_low_249
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_249
NF8180A_low_249
[»] chr2 (4 HSPs)
chr2 (21-210)||(45620468-45620657)
chr2 (81-184)||(20270951-20271053)
chr2 (143-210)||(19643967-19644034)
chr2 (148-184)||(29111862-29111898)
[»] chr3 (6 HSPs)
chr3 (74-210)||(15988539-15988673)
chr3 (139-210)||(25106364-25106435)
chr3 (42-184)||(14889862-14890006)
chr3 (74-210)||(17391015-17391151)
chr3 (135-210)||(11517476-11517551)
chr3 (74-184)||(14182444-14182553)
[»] chr4 (6 HSPs)
chr4 (139-210)||(19624060-19624130)
chr4 (139-210)||(14569482-14569552)
chr4 (140-210)||(54366102-54366172)
chr4 (139-210)||(17378219-17378290)
chr4 (21-86)||(17213991-17214057)
chr4 (143-210)||(24236986-24237057)
[»] scaffold0009 (1 HSPs)
scaffold0009 (139-210)||(256817-256888)
[»] chr5 (3 HSPs)
chr5 (140-210)||(33628299-33628369)
chr5 (139-210)||(11765739-11765809)
chr5 (139-183)||(37985916-37985960)
[»] chr6 (3 HSPs)
chr6 (105-210)||(21929482-21929586)
chr6 (139-210)||(16131331-16131406)
chr6 (143-210)||(15295515-15295586)
[»] scaffold0005 (1 HSPs)
scaffold0005 (139-210)||(247824-247894)
[»] chr8 (6 HSPs)
chr8 (138-207)||(24237104-24237173)
chr8 (134-188)||(11542077-11542131)
chr8 (140-210)||(24906004-24906074)
chr8 (143-210)||(17264576-17264646)
chr8 (139-185)||(23350248-23350294)
chr8 (28-99)||(39116415-39116488)
[»] scaffold0231 (1 HSPs)
scaffold0231 (42-158)||(15417-15534)
[»] scaffold0174 (1 HSPs)
scaffold0174 (45-184)||(22612-22753)
[»] scaffold0026 (1 HSPs)
scaffold0026 (28-86)||(59314-59372)
[»] chr7 (5 HSPs)
chr7 (139-185)||(12245767-12245813)
chr7 (74-178)||(28718055-28718159)
chr7 (139-185)||(15980566-15980612)
chr7 (139-210)||(4073018-4073086)
chr7 (21-77)||(19065221-19065278)
[»] scaffold0601 (1 HSPs)
scaffold0601 (43-112)||(3499-3570)
[»] scaffold0025 (1 HSPs)
scaffold0025 (139-185)||(2563-2609)
[»] chr1 (2 HSPs)
chr1 (138-210)||(41213683-41213758)
chr1 (139-184)||(20820513-20820558)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 45620657 - 45620468
Alignment:
Q  21 tcacatatccaaaagttcaccaaaatataacatgcataaaattcaaacaactacgcagtggatataaatcattcatctccaagtatacatgttgtaactc 120  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||| | ||||    
T  45620657 tcacatctccaaaagttcaccagaatataacatgcataaaattcaaacaactgcgcagcggatataaatcatacatctccaagtatacatgttattactc 45620558  T
Q  121 caaatatggcgatacataaaaatctccaaatcccgacatatcggcaaaatctccataacataaatccagcataatcaatctagaataatc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45620557 caaatatggcgatacataaaaatctccaaatcccgacatatcggcaaaatctctataacataaatccagcataatcaatctagaataatc 45620468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 184
Target Start/End: Original strand, 20270951 - 20271053
Alignment:
Q  81 gatataaatcattcatctccaagtatacatgttgtaactccaaatatggcgatacataaaaatctccaaatcccgacatatcggcaaaatctccataaca 180  Q
    |||||||||||| ||||||||| |||||||||  |||||||||||||  | |||||||||| |||||||| |||||||||| ||||||||||||||||||    
T  20270951 gatataaatcatacatctccaaatatacatgtcataactccaaatatatcaatacataaaa-tctccaaaacccgacatatgggcaaaatctccataaca 20271049  T
Q  181 taaa 184  Q
    ||||    
T  20271050 taaa 20271053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 19643967 - 19644034
Alignment:
Q  143 tctccaaatcccgacatatcggcaaaatctccataacataaatccagcataatcaatctagaataatc 210  Q
    |||| ||||| |||| ||| || |||||||| | |||||||||||| |||||||||||||||||||||    
T  19643967 tctctaaatctcgacgtatgggaaaaatctcaacaacataaatccaacataatcaatctagaataatc 19644034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 29111862 - 29111898
Alignment:
Q  148 aaatcccgacatatcggcaaaatctccataacataaa 184  Q
    |||||||||||||| ||||||||||||||||||||||    
T  29111862 aaatcccgacatatgggcaaaatctccataacataaa 29111898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 210
Target Start/End: Original strand, 15988539 - 15988673
Alignment:
Q  74 cgcagtggatataaatcattcatctccaagtatacatgttgtaactccaaatatggcgatacataaaaatctccaaatcccgacatatcggcaaaatctc 173  Q
    ||||| ||||||| ||||| |||||||||  ||||||||  |||||||||||||  | |||||| ||| |||||||| |||| ||||| |||||||||||    
T  15988539 cgcagcggatatatatcatacatctccaaa-atacatgtcataactccaaatatatcaatacatgaaa-tctccaaaacccgtcatatgggcaaaatctc 15988636  T
Q  174 cataacataaatccagcataatcaatctagaataatc 210  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  15988637 cataacacaaatccagcataaacaatctagaataatc 15988673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 25106435 - 25106364
Alignment:
Q  139 aaaatctccaaatcccgacatatcggcaaaatctccataacataaatccagcataatcaatctagaataatc 210  Q
    ||||||||||| |||||| | || ||||||||||| | ||||||||||||||||||||||||||||||||||    
T  25106435 aaaatctccaagtcccgatacataggcaaaatctcaacaacataaatccagcataatcaatctagaataatc 25106364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 184
Target Start/End: Original strand, 14889862 - 14890006
Alignment:
Q  42 aaaatataacatgcataaa-attcaaacaactacgcagtggatataaatcattcatctcc-aagtatacatgttgtaa-ctccaaatatggcgatacata 138  Q
    ||||||||||||||||||| |||||||||||||||||   |||||||||||| |||| || ||||||||||||  |||  || | |||   | ||| ||     
T  14889862 aaaatataacatgcataaatattcaaacaactacgcaacagatataaatcatacatcaccaaagtatacatgtcataagatcaatatacatccataaat- 14889960  T
Q  139 aaaatctccaaatcccgacatatcggcaaaatctccataacataaa 184  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||    
T  14889961 aaaatctccaaaacccgacaaatgggcaaaatctccataacataaa 14890006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 210
Target Start/End: Original strand, 17391015 - 17391151
Alignment:
Q  74 cgcagtggatataaatcattcatctccaagtatacatgttgtaactccaa-atatggcgatacataaaaatctccaaatcccgacatatcggcaaaatct 172  Q
    ||||| ||||||||||||| ||||||||| |||||||||  |||   ||| ||||  | ||| |||||| |||| |||||||||||||| ||| ||| ||    
T  17391015 cgcagcggatataaatcatacatctccaaatatacatgtcataaaatcaatatatatcaatatataaaa-tctctaaatcccgacatatgggccaaaact 17391113  T
Q  173 ccataacataaatccagcataatcaatctagaataatc 210  Q
    | | |||||||||||| |||||||||||| ||||||||    
T  17391114 caacaacataaatccaacataatcaatctcgaataatc 17391151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 11517551 - 11517476
Alignment:
Q  135 cataaaaatctccaaatcccgacatatcggcaaaatctccataacataaatccagcataatcaatctagaataatc 210  Q
    ||||||||||||||| ||||||||||| ||||||| ||| | ||||  ||| ||||||||| ||||||||||||||    
T  11517551 cataaaaatctccaagtcccgacatatgggcaaaaactcaacaacaataattcagcataattaatctagaataatc 11517476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 184
Target Start/End: Complemental strand, 14182553 - 14182444
Alignment:
Q  74 cgcagtggatataaatcattcatctccaagtatacatgttgtaactccaaatatggcgatacataaaaatctccaaatcccgacatatcggcaaaatctc 173  Q
    ||||| ||||||||||||| |||| ||||  ||| | ||  |||||||||||||  | |||||| ||| ||| |||| ||||| |||| |||||||||||    
T  14182553 cgcagcggatataaatcatacatcgccaaaaatatacgtcataactccaaatatatcaatacatgaaa-tcttcaaaacccgagatatgggcaaaatctc 14182455  T
Q  174 cataacataaa 184  Q
    |||||||||||    
T  14182454 cataacataaa 14182444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 19624130 - 19624060
Alignment:
Q  139 aaaatctccaaatcccgacatatcggcaaaatctccataacataaatccagcataatcaatctagaataatc 210  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  19624130 aaaatctccaaatcccgacatat-ggtaaaatctccataacataaatccagcataatcaatctagaataatc 19624060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 14569482 - 14569552
Alignment:
Q  139 aaaatctccaaatcccgacatatcggcaaaatctccataacataaatccagcataatcaatctagaataatc 210  Q
    |||||||||||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  14569482 aaaatctccaaatccc-acatatgggcaaaatctcaataacatgaatccagcataatcaatctagaacaatc 14569552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 54366172 - 54366102
Alignment:
Q  140 aaatctccaaatcccgacatatcggcaaaatctccataacataaatccagcataatcaatctagaataatc 210  Q
    ||||||||||| |||||||||| ||||||||| |||||| | ||||||||||||| |||||||||||||||    
T  54366172 aaatctccaaaacccgacatatgggcaaaatccccataatacaaatccagcataaacaatctagaataatc 54366102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 17378290 - 17378219
Alignment:
Q  139 aaaatctccaaatcccgacatatcggcaaaatctccataacataaatccagcataatcaatctagaataatc 210  Q
    ||||||||||| ||| |||| ||  |||||||||| | ||||||||| ||||||||||||||||||||||||    
T  17378290 aaaatctccaagtcctgacacatgagcaaaatctcaacaacataaattcagcataatcaatctagaataatc 17378219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 17214057 - 17213991
Alignment:
Q  21 tcacatatccaaaagttcaccaaaatataacatgcat-aaaattcaaacaactacgcagtggatata 86  Q
    |||||| | ||||||||| |||||| ||||||||||| ||||||||| ||||||||||| |||||||    
T  17214057 tcacatctacaaaagttctccaaaacataacatgcataaaaattcaagcaactacgcagcggatata 17213991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 24236986 - 24237057
Alignment:
Q  143 tctccaaatcccgacatatcggcaaaatctccataacataaat----ccagcataatcaatctagaataatc 210  Q
    |||||||||||||||| || |  |||||||||| |||||||||    |||| ||||||||||||||||||||    
T  24236986 tctccaaatcccgacaaatggataaaatctccacaacataaataaacccagaataatcaatctagaataatc 24237057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 256888 - 256817
Alignment:
Q  139 aaaatctccaaatcccgacatatcggcaaaatctccataacataaatccagcataatcaatctagaataatc 210  Q
    ||||||| |||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  256888 aaaatcttcaaatcccaatatatgggcaaaatctccataacataaatccagcataatcaatctagaataatc 256817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 33628369 - 33628299
Alignment:
Q  140 aaatctccaaatcccgacatatcggcaaaatctccataacataaatccagcataatcaatctagaataatc 210  Q
    ||||||||||| |||||||||| |||||||||||||||| | ||||||||||||| |||||||||||||||    
T  33628369 aaatctccaaagcccgacatataggcaaaatctccataatacaaatccagcataaacaatctagaataatc 33628299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 11765809 - 11765739
Alignment:
Q  139 aaaatctccaaatcccgacatatcggcaaaatctccataacataaatccagcataatcaatctagaataatc 210  Q
    |||||||| |||||| ||||||| ||||||||||| | ||||||||||||||| || |||||||||||||||    
T  11765809 aaaatctcaaaatcc-gacatatgggcaaaatctcaacaacataaatccagcaaaagcaatctagaataatc 11765739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 37985916 - 37985960
Alignment:
Q  139 aaaatctccaaatcccgacatatcggcaaaatctccataacataa 183  Q
    ||||||||||||||||||||||| || |||||||| | |||||||    
T  37985916 aaaatctccaaatcccgacatatgggaaaaatctcaagaacataa 37985960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 21929482 - 21929586
Alignment:
Q  105 atacatgttgtaactccaaatatggcgatacataaaaatctccaaatcccgacatatcggcaaaatctccataacataaatccagcataatcaatctaga 204  Q
    ||||||||  |||||||||||||  | |||||||||| |||||||| || ||||||| |||||||||||||||||| ||||||| ||||| |||||||||    
T  21929482 atacatgtcataactccaaatatatcaatacataaaa-tctccaaaaccggacatatgggcaaaatctccataacaaaaatccaacataaacaatctaga 21929580  T
Q  205 ataatc 210  Q
    | ||||    
T  21929581 acaatc 21929586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 16131331 - 16131406
Alignment:
Q  139 aaaatctccaaatcccgacatatcggcaaaatctccataacat----aaatccagcataatcaatctagaataatc 210  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    ||||||||  |||||||||||||||||||    
T  16131331 aaaatctccaaatcccgacatatgggcaaaatctccacaacataaacaaatccagattaatcaatctagaataatc 16131406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 15295586 - 15295515
Alignment:
Q  143 tctccaaatcccgacatatcggcaaaatctccataacataaat----ccagcataatcaatctagaataatc 210  Q
    |||||||||||||||| || || ||||||| || |||||||||    |||| ||||||||||||||||||||    
T  15295586 tctccaaatcccgacaaatgggtaaaatcttcacaacataaataaatccagaataatcaatctagaataatc 15295515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 247894 - 247824
Alignment:
Q  139 aaaatctccaaatcccgacatatcggcaaaatctccataacataaatccagcataatcaatctagaataatc 210  Q
    |||||||||||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  247894 aaaatctccaaatccc-acatatgggcaaaatctcaataacatgaatccagcataatcaatctagaacaatc 247824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 24237104 - 24237173
Alignment:
Q  138 aaaaatctccaaatcccgacatatcggcaaaatctccataacataaatccagcataatcaatctagaata 207  Q
    ||||||||| || |||||||| || ||||||||||| | |||||||||||||||||||||||||||||||    
T  24237104 aaaaatctcaaagtcccgacacatgggcaaaatctcaacaacataaatccagcataatcaatctagaata 24237173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 11542077 - 11542131
Alignment:
Q  134 acataaaaatctccaaatcccgacatatcggcaaaatctccataacataaatcca 188  Q
    |||||||||||||||| |||||||| || ||||||||||| | ||||||||||||    
T  11542077 acataaaaatctccaagtcccgacacatgggcaaaatctcaacaacataaatcca 11542131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 24906004 - 24906074
Alignment:
Q  140 aaatctccaaatcccgacatatcggcaaaatctccataacataaatccagcataatcaatctagaataatc 210  Q
    ||||||||||| || | |||||  ||||| ||||||||| | ||||||||||||| |||||||||||||||    
T  24906004 aaatctccaaaacctggcatatgtgcaaagtctccataatacaaatccagcataaacaatctagaataatc 24906074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 17264576 - 17264646
Alignment:
Q  143 tctccaaatcccgacatatcggcaaaatctccataacataaat----ccagcataatcaatctagaataatc 210  Q
    |||||||||||||||| || |||||| |||||| |||||||||    |||| ||||||||||||||||||||    
T  17264576 tctccaaatcccgacaaatgggcaaa-tctccacaacataaataaatccagaataatcaatctagaataatc 17264646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 23350248 - 23350294
Alignment:
Q  139 aaaatctccaaatcccgacatatcggcaaaatctccataacataaat 185  Q
    |||||||||||| ||| ||| || |||||||||||||||||||||||    
T  23350248 aaaatctccaaaacccaacaaatgggcaaaatctccataacataaat 23350294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 39116488 - 39116415
Alignment:
Q  28 tccaaaagttcaccaaaa-tataacatgcat-aaaattcaaacaactacgcagtggatataaatcattcatctc 99  Q
    ||||||||||| |||||| |||||||||||| ||||||||||||||||| ||| | ||||| | ||| ||||||    
T  39116488 tccaaaagttctccaaaaatataacatgcataaaaattcaaacaactacacagcgaatatataccatacatctc 39116415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 158
Target Start/End: Complemental strand, 15534 - 15417
Alignment:
Q  42 aaaatataacatgcataaaa-ttcaaacaactacgcagtggatataaatcattcatctccaagtatacatgttgt-aactccaaatatggcgatacataa 139  Q
    |||||||||||||||||||| || ||||| |||||||  ||||||| | ||| |||||||||||||||||||  | |||||||||||   | |||||| |    
T  15534 aaaatataacatgcataaaaatttaaacagctacgcatcggatatatagcatacatctccaagtatacatgtcataaactccaaatacatcaatacat-a 15436  T
Q  140 aaatctccaaatcccgaca 158  Q
    |||||||||||||||||||    
T  15435 aaatctccaaatcccgaca 15417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 184
Target Start/End: Complemental strand, 22753 - 22612
Alignment:
Q  45 atataacatgcataaa-attcaaacaactacgcagtggatataaatcattcatctccaa-gtatacatgttgtaa-ctccaaatatggcgatacataaaa 141  Q
    |||||||||||||||| ||||||| |||||||||  ||||||| | ||| ||||||||| ||||||||||  ||| ||| ||||||  | ||||||||||    
T  22753 atataacatgcataaatattcaaataactacgcaacggatatatagcatacatctccaaagtatacatgtcataaactcaaaatatatcaatacataaaa 22654  T
Q  142 atctccaaatcccgacatatcggcaaaatctccataacataaa 184  Q
     ||| |||| ||||||| || ||||||||| ||||||||||||    
T  22653 -tcttcaaaacccgacaaataggcaaaatccccataacataaa 22612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 59372 - 59314
Alignment:
Q  28 tccaaaagttcaccaaaatataacatgcataaaattcaaacaactacgcagtggatata 86  Q
    ||||||||||||| | |||||||||||||||||||||| |||||||||||| |||||||    
T  59372 tccaaaagttcacaagaatataacatgcataaaattcagacaactacgcagcggatata 59314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 12245767 - 12245813
Alignment:
Q  139 aaaatctccaaatcccgacatatcggcaaaatctccataacataaat 185  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  12245767 aaaatctccaaatcccgacatatgggcaaaatctccataacataaat 12245813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 178
Target Start/End: Original strand, 28718055 - 28718159
Alignment:
Q  74 cgcagtggatataaatcattcatctccaa-gtatacatgttgtaactccaaatatggcgatacataaaaatctccaaatcccgacatatcggcaaaatct 172  Q
    ||||||||||||||| ||| || |||||| ||||||||||  ||||| |||||||  | |||||| ||| |||||||| ||| |||||  ||||||||||    
T  28718055 cgcagtggatataaaccatacacctccaaagtatacatgtcataacttcaaatatatcaatacatgaaa-tctccaaaacccaacataagggcaaaatct 28718153  T
Q  173 ccataa 178  Q
    ||||||    
T  28718154 ccataa 28718159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 15980612 - 15980566
Alignment:
Q  139 aaaatctccaaatcccgacatatcggcaaaatctccataacataaat 185  Q
    ||||||| ||||||||||||||| || |||||||||| |||||||||    
T  15980612 aaaatcttcaaatcccgacatatgggtaaaatctccacaacataaat 15980566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 4073086 - 4073018
Alignment:
Q  139 aaaatctccaaatcccgacatatcggcaaaatctccataacataaatccagcataatcaatctagaataatc 210  Q
    |||||||||||||||||| |||| || || |||||   |||||||||||||||||  ||||||| |||||||    
T  4073086 aaaatctccaaatcccgatatatgggtaatatctc---aacataaatccagcatagacaatctaaaataatc 4073018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 19065221 - 19065278
Alignment:
Q  21 tcacatatccaaaagttcaccaaaatataacatgcat-aaaattcaaacaactacgca 77  Q
    |||||| | ||||||||| ||||| |||||||||||| ||||||||| ||||||||||    
T  19065221 tcacatctacaaaagttctccaaattataacatgcataaaaattcaagcaactacgca 19065278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0601 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 3570 - 3499
Alignment:
Q  43 aaatataacatgcataaa-attcaaacaactacgcagtggatataaatcattcatctcc-aagtatacatgt 112  Q
    |||||||||||||||||| |||||||||||||||||| ||||||| | ||| ||||||| ||||||||||||    
T  3570 aaatataacatgcataaatattcaaacaactacgcagcggatatataacatacatctccaaagtatacatgt 3499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 2563 - 2609
Alignment:
Q  139 aaaatctccaaatcccgacatatcggcaaaatctccataacataaat 185  Q
    |||||||||||| ||||||| || |||||||||||||||||||||||    
T  2563 aaaatctccaaaacccgacaaataggcaaaatctccataacataaat 2609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 41213758 - 41213683
Alignment:
Q  138 aaaaatctccaaatcccgacatatcggcaaaatctccataacataaat----ccagcataatcaatctagaataatc 210  Q
    |||| |||||||||||||||| || |||||| ||||||||||||||||    |||| |||| |||||||||||||||    
T  41213758 aaaattctccaaatcccgacaaatgggcaaa-tctccataacataaataaatccagaataaacaatctagaataatc 41213683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 20820513 - 20820558
Alignment:
Q  139 aaaatctccaaatcccgacatatcggcaaaatctccataacataaa 184  Q
    |||||||| |||||||||||||| ||||||||||| | ||||||||    
T  20820513 aaaatctctaaatcccgacatattggcaaaatctcaacaacataaa 20820558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University