View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8180A_low_253 (Length: 240)
Name: NF8180A_low_253
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_253 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 235
Target Start/End: Complemental strand, 4314810 - 4314585
Alignment:
| Q |
10 |
atcatggaggcaattactagaagtgcatgtcatataaataatatagagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4314810 |
atcatggaggcaattactagaagtgcatgtcatataaataatatagagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattg |
4314711 |
T |
|
| Q |
110 |
ttttggatgatgtttggaccgaggattatgacgcttggaattcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4314710 |
ttttggatgatgtttggaccgaggattatgacgcttggaattcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccg |
4314611 |
T |
|
| Q |
210 |
aagtaaaaaagttgcttctatggtac |
235 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
4314610 |
aagtaaaaaagttgcttgtatggtac |
4314585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 231
Target Start/End: Complemental strand, 4305948 - 4305727
Alignment:
| Q |
10 |
atcatggaggcaattactagaagtgcatgtcatataaataatatagagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattg |
109 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4305948 |
atcatggaggcagttactagaagtgcttgtaatataaataatatagagttgcttcatctagatttgaaggaaaaactggccggaaagaagttcttaattg |
4305849 |
T |
|
| Q |
110 |
ttttggatgatgtttggaccgaggattatgacgcttggaattcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccg |
209 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| |||||||| || |||||||| |||||||| | | || |||||||||||||||||||||||||| |
|
|
| T |
4305848 |
ttttggatgacgtttggactgaggattatgatgcttggaaatcccttttaaggcctcttcagtacagtgacaaaggaagtaaaattcttgtaacaacccg |
4305749 |
T |
|
| Q |
210 |
aagtaaaaaagttgcttctatg |
231 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
4305748 |
tattaaaaaagttgcttctatg |
4305727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 55 - 233
Target Start/End: Original strand, 4253720 - 4253898
Alignment:
| Q |
55 |
gagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcac |
154 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||| | |
|
|
| T |
4253720 |
gagttgcttcatcgtgatttgaaggaaaaactgactggaaaaaagttcttaattgttttggatgatgtatggaccgaggattatgacagctggaattctc |
4253819 |
T |
|
| Q |
155 |
ttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctatggt |
233 |
Q |
| |
|
||||||| |||||||| | || | | ||||| |||||||||||||||||| || | | ||||||||||||||||||| |
|
|
| T |
4253820 |
ttttaaggcctcttcaatacggggctaagggaaataaaattcttgtaacaactcgtattgaaaaagttgcttctatggt |
4253898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 233
Target Start/End: Original strand, 4246590 - 4246780
Alignment:
| Q |
43 |
ataaataatatagagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacg |
142 |
Q |
| |
|
|||||||| | |||||| |||||| |||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||||| | |||||||| || |
|
|
| T |
4246590 |
ataaataacaaagagttacttcattgtgatttgaaggaaaaactgactggaaaaaagttcttgattgttttggacgatgtttggatcaaggattataaca |
4246689 |
T |
|
| Q |
143 |
cttggaattcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctatggt |
233 |
Q |
| |
|
||||||||| ||| | | |||||||| | || | | |||||| ||||||||||||||||| || ||| | ||||||||||||||||| |
|
|
| T |
4246690 |
gttggaattctcttatgatgcctcttcaatacggagctaagggaagcaaaattcttgtaacaacgcgtagtgataaagttgcttctatggt |
4246780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 10 - 235
Target Start/End: Original strand, 41933119 - 41933344
Alignment:
| Q |
10 |
atcatggaggcaattactagaagtgcatgtcatataaataatatagagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattg |
109 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
41933119 |
atcatggaggcagttactagaagtgcttgtaatataaataatatagagttgcttcatctagatttgaaggaaaaactgtccggaaagaagttcttaattg |
41933218 |
T |
|
| Q |
110 |
ttttggatgatgtttggaccgaggattatgacgcttggaattcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccg |
209 |
Q |
| |
|
|||| |||||| | ||||||||||||||||| ||||||||||| |||||||| |||||||| |||| |||| |||||||||||||||||||||||||| |
|
|
| T |
41933219 |
ttttagatgatttctggaccgaggattatgatgcttggaattctcttttaaggcctcttcaatatggtaccaagggaagtaaaattcttgtaacaaccca |
41933318 |
T |
|
| Q |
210 |
aagtaaaaaagttgcttctatggtac |
235 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
41933319 |
tattaaaaaagttgcttctatggtac |
41933344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 62 - 233
Target Start/End: Complemental strand, 34802834 - 34802663
Alignment:
| Q |
62 |
ttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcacttttaag |
161 |
Q |
| |
|
|||||| |||||||||||| || |||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||| ||| |||| |
|
|
| T |
34802834 |
ttcatcaagatttgaaggagaagttggcgggaaagaagttcttaattgtattggatgatgtctggactgaggattatgacagttggaatattcttataag |
34802735 |
T |
|
| Q |
162 |
acctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctatggt |
233 |
Q |
| |
|
||| |||| || || | |||||||||||||||||||||||| | | | |||| |||||| ||||||| |
|
|
| T |
34802734 |
gccttttcaatgcggaactaaaggaagtaaaattcttgtaacaacctgtattgaaaatgttgctactatggt |
34802663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University