View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_254 (Length: 239)
Name: NF8180A_low_254
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_254 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 49156342 - 49156205
Alignment:
| Q |
2 |
tcgagtttggtgttggaagttgctcagcatttgggtgaaggtgttgtgagaacgattgctatggatgctactgaaggtgttgttcgtggatggcgtgttc |
101 |
Q |
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| T |
49156342 |
tcgagattggtgttggaagttgctcagcatttgggtgaaggtgttgtgagaacgattgctatggatgctactgaaggtgttgttcgtggatggcgtgttc |
49156243 |
T |
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| Q |
102 |
ttaacaccggttctcccatcagtgtaaatatctattca |
139 |
Q |
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| T |
49156242 |
ttaacaccggttctcccatcagtgtaaatatctattca |
49156205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 49160511 - 49160388
Alignment:
| Q |
8 |
ttggtgttggaagttgctcagcatttgggtgaaggtgttgtgagaacgattgctatggatgctactgaaggtgttgttcgtggatggcgtgttcttaaca |
107 |
Q |
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| T |
49160511 |
ttggtgttggaggttgcacaacatatgggtgaaggtgttgtgagaactattgctatggatgccactgaaggagttgttagagggtggcgtgttctcaaca |
49160412 |
T |
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| Q |
108 |
ccggttctcccatcagtgtaaata |
131 |
Q |
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| T |
49160411 |
ccggctcccctatcagtgtaaata |
49160388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 49156143 - 49156105
Alignment:
| Q |
201 |
tgagatctgattttgaaatcattgcggtttgaattttaa |
239 |
Q |
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| T |
49156143 |
tgagatctgattttgaaatcattgcggtttgaattttaa |
49156105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 45639353 - 45639271
Alignment:
| Q |
2 |
tcgagtttggtgttggaagttgctcagcatttgggtgaaggtgttgtgagaacgattgctatggatgctactgaaggtgttgt |
84 |
Q |
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| T |
45639353 |
tcgagattggtgttggaactgactcagcatttgggtgaaggtgttgtgagaaccattgctatggatgctactgaaggtgttgt |
45639271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 6619344 - 6619292
Alignment:
| Q |
29 |
catttgggtgaaggtgttgtgagaacgattgctatggatgctactgaaggtgt |
81 |
Q |
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| T |
6619344 |
catttgcgtgaaggtgtaatgagaacaattgatatggatgctaatgaaggtgt |
6619292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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